Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 87 / 3e-19 MADS MADS-box transcription factor family protein (.1) AT5G58890 81 / 4e-17 MADS AGL82 AGAMOUS-like 82 (.1) AT3G18650 59 / 2e-09 MADS AGL103 AGAMOUS-like 103 (.1) AT1G31630 57 / 9e-09 MADS AGL86 AGAMOUS-like 86 (.1) AT2G22630 56 / 9e-09 MADS AGL17 AGAMOUS-like 17 (.1) AT5G26580 57 / 1e-08 MADS AGL34 AGAMOUS-like-34 (.1) AT5G39750 56 / 1e-08 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1) AT1G31640 56 / 2e-08 MADS AGL92 AGAMOUS-like 92 (.1) AT5G06500 55 / 3e-08 MADS AGL96 AGAMOUS-like 96 (.1) AT5G27960 55 / 4e-08 MADS AGL90 AGAMOUS-like 90 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019819 [exp] 638 / 0 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10007371 [exp] 192 / 4e-58 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10020789 [exp] 177 / 5e-52 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10014578 [exp] 62 / 1e-10 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10000974 [exp] 58 / 7e-10 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10022316 [exp] 59 / 1e-09 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10032108 [exp] 58 / 4e-09 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014883 [exp] 56 / 9e-09 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10035029 [exp] 53 / 1e-08 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 184 / 6e-54 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 179 / 2e-52 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 156 / 8e-44 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 122 / 2e-31 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.013G107600 [exp] 58 / 4e-10 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.004G222200 [exp] 60 / 5e-10 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.005G002400 [exp] 60 / 5e-10 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.012G062300 [exp] 58 / 2e-09 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.015G134800 [exp] 54 / 4e-08 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 54 / 6e-08 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10014095 pacid=23156797 polypeptide=Lus10014095 locus=Lus10014095.g ID=Lus10014095.BGIv1.0 annot-version=v1.0 ATGGGGCACAAAAGAGTGAAGATGGAGCTGATAAAGAAGGAGAGGAGCCGAATGCAGACTTACAAGAAAAGAAAAGCCAACTTGCTGAAGAAGATCAACG AGTTCAGCGTGCTCTGCGACGTCAAAGCTTGCCTCATCATCTTCGGCCCCAACACCAACAACGTCAGCAATCAGTTGGAGCTCGAGACGTGGGCGCCGGA ATCCTGCAGCATTCAGGACCTAATCCAGCAGTACAGAACCTCCGACCAGCCGAGAAGGTGCTACAGCGTGTCGGATTACTTCTCCGAGAAGAAGAAGCGG GTCGATGTCGAAATCGCCAAGCTGAGGAAGCAGATTCACAAGCAGCAGTTTCCTACTGAGGATGGTGATCGGTTCAACCGGTTTTCGGCTGATGAGTTGA AGCTGATTTTGGGTTCGATCGACTCGAAGCTCGAAGCTGCTGATCAGAGGATTGCTGCTCTGAATGCAAAACGGAATCTGGGGATAGTTCATCATCAGGC TGTTCCGATTAGTACCTGGCCACAGAATAATAATCCTGTGGAATCTGGTTTTGGAATTGAGAGGGAATTCGATGATGATGATGATGTTGCTGTTCATCAT CAGGATCTGAGCCGCCATTGCCAGTTTGAACAGCAGAACTCGGTCAATGCACTGCTGCAGCTGAATTCTAATCATAACAATAATTACTTTGACAATTATT ATTATCAGAATAATAATAATTCCTTGGGTTTTCCAGCTGAAGAGCAGAATTTCTTTCCTGAGGTTCCTTTCTGTTTCCAGCCAGCGGAGTTGACTGGTCC GTTAATGGCGGAGTTTGGTTCTCCTGACAAAGGATTCAACTTTGGGCTGATGCAGGCGCAAAGGTATCCTAATTTTCTGATGCAGCAGGAGATGACGATA AATAATCAAGTGGTGGGGAGATCAAACGGGATGATTCATCATGGGCTGCTCAATTCCTTGCCTGGAACTAGTACTGGTGCTACTAGTAGTCGTCCCTGGA ATTTCGATTCCGCTGGGAACCCGGATGCAGGAATGAGCTTTATAGCGTCTTCGAGTTACAAGCAGCAGTTTCAGTTTTCTCCCATGGCGGCCGGGTTTGC TAATCCGAGGATGTTCGATGAGTCGATTGGAGGCGGCTTCGAGTTCGGTGGGGGAGACCATAAGCAGCTCTAG
AA sequence Show only first row Show all	>Lus10014095 pacid=23156797 polypeptide=Lus10014095 locus=Lus10014095.g ID=Lus10014095.BGIv1.0 annot-version=v1.0 MGHKRVKMELIKKERSRMQTYKKRKANLLKKINEFSVLCDVKACLIIFGPNTNNVSNQLELETWAPESCSIQDLIQQYRTSDQPRRCYSVSDYFSEKKKR VDVEIAKLRKQIHKQQFPTEDGDRFNRFSADELKLILGSIDSKLEAADQRIAALNAKRNLGIVHHQAVPISTWPQNNNPVESGFGIEREFDDDDDVAVHH QDLSRHCQFEQQNSVNALLQLNSNHNNNYFDNYYYQNNNNSLGFPAEEQNFFPEVPFCFQPAELTGPLMAEFGSPDKGFNFGLMQAQRYPNFLMQQEMTI NNQVVGRSNGMIHHGLLNSLPGTSTGATSSRPWNFDSAGNPDAGMSFIASSSYKQQFQFSPMAAGFANPRMFDESIGGGFEFGGGDHKQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	1.0	0.9374
AT5G41720			unknown protein		Lus10006473 [exp]	2.2	0.8976
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	2.4	0.8923
AT5G04010			F-box family protein (.1)		Lus10031031 [exp]	5.9	0.8249
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	6.3	0.8836
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	6.7	0.8758
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	7.9	0.8878
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	8.2	0.9103
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	10.6	0.8324
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	15.2	0.9072

Compare expression of checked genes

Lus10014095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.