Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 851 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 830 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 775 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 159 / 6e-46 unknown protein AT1G72190 101 / 5e-23 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G68010 98 / 6e-22 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 97 / 6e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G14780 96 / 3e-21 FDH formate dehydrogenase (.1) AT1G12550 92 / 3e-20 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 82 / 9e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019818 [exp] 1023 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 950 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 483 / 9e-165 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 260 / 4e-84 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 100 / 9e-23 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 97 / 2e-21 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 96 / 3e-21 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014115 [exp] 98 / 4e-21 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10035866 [exp] 95 / 5e-21 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096600 [exp] 911 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 906 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 864 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 854 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 788 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 783 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 101 / 9e-23 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G052700 [exp] 94 / 9e-21 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G161300 [exp] 89 / 8e-19 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.002G151100 [exp] 87 / 2e-18 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10014096 pacid=23156827 polypeptide=Lus10014096 locus=Lus10014096.g ID=Lus10014096.BGIv1.0 annot-version=v1.0 ATGGCTACTTCCACCACCAGCCTCAACGTCCCGTCGCTCAAGTCCTCATTCACCTCCATCACTTCCCTTCCGCGACTCTCCATTGCCTCCCTCAACCTCC GCGCCGCCAACAACAACCGCCGTTTCATCGTCCTATCCTCCGCCGGGATCGGCGGAAAGCCGACCGTCCTGGTGACGGAGAAGCTCGGTGAAGCTGGGTT GGATCTGCTGAAGGACTTTGCCAACGTGGACTGCTCGTACAACCTCTCCCCTGAAGAACTCAACACCAAGATCTCGCTCTGTGATGCTCTCATCGTACGA AGCGCGACCAAGGTGTCTCGTGAGGTGTTCGAATCTTCCGGCGGGAGGTTGAAGGTCGTCGGGAGAGCTGGGGTTGGAATTGATAACGTGGATCTGGCTG CTGCGACGGAGCATGGTTGTTTGGTTGTTAATGCTCCGACGGCGAACACTGTTGCTGCTGCGGAGCATGGGATTGCTCTCTTGGCTGCTATGGCGAGGAA TGTCGCTCAGGCTGATGCCTCTGTTAAATCTGGGAAGTGGCAGAGGAACAAGTATGTGGGTGTCTCTCTAGTTGGGAAAACACTTGCAGTAATGGGTTTT GGAAAGGTTGGAACAGAGGTGGCTAGGCGAGCCAAGGGGCTTGGAATGCACGTGATTGCACACGATCCCTATGCTCCTGCAGACCGTGCTCGTGCTATCG GCGTGGAGCTAGTGACATTCGAAGAAGCCATAGCAACTGCGGATTTCATCTCCTTGCACATGCCTCTCACCCCTACAACTTCTAAGATGCTCAACGACGA AACTTTTGCAAAGATGAAGAAAGGAGTTAGAATTGTCAATGTGGCTCGTGGTGGCGTGATTGACGAAGAAGCTCTGGTTAGAGCATTGGACTCCGGAATT GTTGCTCAGGCTGCGCTAGATGTCTTCACGGTGGAACCGCCATCACCAGACAGCAAGTTGGTGCTGCATGAGAATGTCACTGTTACACCTCATCTTGGTG CTAGCACCGTTGAAGCTCAGGAAGGTGTGGCTATCGAAATTGCTGAAGCTGTTGTTGGAGCATTGAAGGGGGAGCTTGCTTCTACTGCTGTCAACGCACC AATGGTACCGGCAGAGGTGCTATCGGAGCTGAAACCATATGTCGAACTTGCTGAGAAACTCGGGCGACTGGCTGTTCAGCTTGTAACTGGTGGAAGTGGT GTCAAATCTGTGAAAGTGACTTACGCTTCTGCTAGAGCACCTGACGATCTCGACACCAGGGTTTTGCGTGCCATGATCACCAAGGGTCTTATCGAGCCGA TATCAAGTGTTTTCGTCAACTTGGTTAATGCAGACTTCACCGCCAAGCAAAGGGGAGTGAGGATAACTGAAGAGCGCATAATCCTCGATGGATCTCCCGA GGAGCCCCTGGACTTCATCCAGGTTCAGATAGCCAATGTGGAATCGAAATTCGCTAGTGCCATCTCGGAGACTGGAGAGATCCGGGTTGAGGGGCGTGTG AAGGATGGTGTTCCCCATCTGACAAGGGTGGGATCGTTCGAGGTTGACGTGAGCTTGGAAGGCAGCATTATACTGTGCCGTCAGGTTGATCAGCCTGGTA TGATTGGCAAGGTTGGAAGCGTTTTGGGTCAGGAGAATGTTAATGTCAGTTTCATGAGCGTTGGAAGAATTGCCCCCAGGAAGCAAGCTGTCATGGCAAT TGGTGTCGATGATCAGCCCAGCAAACAGACTCTGCAGAGGATTGGTGAAATCCCTGCTGTTGAGGAGTTTGTTTTCCTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10014096 pacid=23156827 polypeptide=Lus10014096 locus=Lus10014096.g ID=Lus10014096.BGIv1.0 annot-version=v1.0 MATSTTSLNVPSLKSSFTSITSLPRLSIASLNLRAANNNRRFIVLSSAGIGGKPTVLVTEKLGEAGLDLLKDFANVDCSYNLSPEELNTKISLCDALIVR SATKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGF GKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVTFEEAIATADFISLHMPLTPTTSKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGI VAQAALDVFTVEPPSPDSKLVLHENVTVTPHLGASTVEAQEGVAIEIAEAVVGALKGELASTAVNAPMVPAEVLSELKPYVELAEKLGRLAVQLVTGGSG VKSVKVTYASARAPDDLDTRVLRAMITKGLIEPISSVFVNLVNADFTAKQRGVRITEERIILDGSPEEPLDFIQVQIANVESKFASAISETGEIRVEGRV KDGVPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGQENVNVSFMSVGRIAPRKQAVMAIGVDDQPSKQTLQRIGEIPAVEEFVFLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34200		EDA9	embryo sac development arrest ...		Lus10014096 [exp]	0	1
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	2.0	0.9386
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	3.5	0.9144
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	6.7	0.8834
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	7.1	0.9094
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	9.4	0.8975
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	9.5	0.9034
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	10.0	0.8695
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	11.5	0.8980
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	12.7	0.9013
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	14.4	0.8807

Compare expression of checked genes

Lus10014096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.