Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 327 / 1e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 261 / 3e-87 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019817 [exp] 325 / 8e-114 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001129 [exp] 269 / 1e-89 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10001128 [exp] 257 / 1e-85 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042636 [exp] 197 / 1e-62 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10042634 [exp] 130 / 9e-38 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042635 [exp] 80 / 3e-17 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300800 [exp] 345 / 2e-120 AT4G34215 311 / 2e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.009G096400 [exp] 343 / 7e-120 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022700 [exp] 283 / 2e-96 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 280 / 1e-94 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096500 [exp] 137 / 1e-40 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF03629 [flax] [poplar] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Lus10014097 pacid=23156864 polypeptide=Lus10014097 locus=Lus10014097.g ID=Lus10014097.BGIv1.0 annot-version=v1.0 ATGGAGAAGATCGGGGAGGAAACGCCTTACTCACTGCACCCAGCGGCGACGCAGATCTTCATCCTATCGGGGCAGAGCAACATGGCCGGTCGAGGCGGCG TTGTCACCACGCACCACAACCACAGCCGCCACAAGCAGTGGGACGGCCTAATCCCGCCGGAATGCCAATCACACCCGGAGATTCTCCGCCTCTCTGCAGA TCTGCGATGGGAGACCGCTGTGGAGCCTCTCCACGCCGACATCGATACAAAGAAAGTGTGCGGGATTGGGCCTGGGATGTCGTTCATCAACGCTGTGAAG GAGCGTACCGAATGCAGCGGCGGAAGAATCGGATTGGTGCCGTGCGCCGTGGGAGGGACGGCGATACGAGAGTGGGCGCGTGGGGAGGCGCTGTACGAGA ACATGGTAAGGAGATCTAAAGAGAGCGTGAGATCTGGAGCTGAAATCAGGTGCTTGCTGTGGTACCAGGGTGAAAGCGACACGTCGACGGAGCACGATGC GGTGTCGTATGAGGGGAAGATGGAGGAGCTGATTCGGAATGTGAGGGAGGATTTGGGATTGCCTCAACTCCCTGTCATTCAGGTAGCATTGGCGTCGGGA GATCACAAGTACATCGAGAAGGTGAGGGAAGCACAGCTTGGGATGAAGATGGAGAAAGTGGCGTGTGTGGATGCAAAAGGGTTAAAGCTCAAGGAAGACA ATCTTCATCTCACTACTGAAGCTCAGATTGAGCTGGGCCACATGCTAGCCGATGCTTACCTCGCTAACTTTGTTGTCGCATCATCGCAATCGCCATCTTC TTAA
AA sequence Show only first row Show all	>Lus10014097 pacid=23156864 polypeptide=Lus10014097 locus=Lus10014097.g ID=Lus10014097.BGIv1.0 annot-version=v1.0 MEKIGEETPYSLHPAATQIFILSGQSNMAGRGGVVTTHHNHSRHKQWDGLIPPECQSHPEILRLSADLRWETAVEPLHADIDTKKVCGIGPGMSFINAVK ERTECSGGRIGLVPCAVGGTAIREWARGEALYENMVRRSKESVRSGAEIRCLLWYQGESDTSTEHDAVSYEGKMEELIRNVREDLGLPQLPVIQVALASG DHKYIEKVREAQLGMKMEKVACVDAKGLKLKEDNLHLTTEAQIELGHMLADAYLANFVVASSQSPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	0	1
AT3G25130			unknown protein		Lus10022768 [exp]	1.4	0.8810
AT3G25130			unknown protein		Lus10011835 [exp]	2.4	0.8542
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	4.9	0.8251
AT1G67050			unknown protein		Lus10009160 [exp]	5.2	0.8393
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	10.2	0.8290
AT5G40250			RING/U-box superfamily protein...		Lus10029178 [exp]	11.0	0.8085
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	12.4	0.8114
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	14.7	0.7806
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	24.4	0.8258
AT2G34585			unknown protein		Lus10038503 [exp]	27.0	0.7629

Compare expression of checked genes

Lus10014097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.