Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37250 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 504 / 6e-168 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 318 / 9e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 306 / 2e-92 RLK receptor-like kinase (.1) AT2G23300 252 / 3e-72 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 206 / 3e-56 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 177 / 1e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 177 / 2e-46 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 153 / 1e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 136 / 5e-33 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019816 [exp] 469 / 3e-161 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10030333 [exp] 300 / 1e-89 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 295 / 7e-88 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 210 / 1e-57 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 206 / 4e-56 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 183 / 2e-48 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 183 / 2e-48 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 163 / 1e-41 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 157 / 1e-39 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300700 [exp] 583 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 313 / 1e-94 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 300 / 1e-89 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 209 / 2e-57 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 208 / 5e-57 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 188 / 4e-50 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 179 / 7e-47 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 171 / 2e-44 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 154 / 9e-39 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 136 / 4e-33 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014098 pacid=23156750 polypeptide=Lus10014098 locus=Lus10014098.g ID=Lus10014098.BGIv1.0 annot-version=v1.0 ATGATTAGCTCACCCTTCATCTTCTTCTCCATCCTTTCTCTGTTTTCCCCTGTTTCTTCGCTAAACAGAGACGGCATCCTCTTACTCTCCTTCAAATACT CCATCCTCGGCGACCCATTGTCCGTACTACAAACATGGAACTACGACGACGCAACCCCTTGTTCTTGGACCGGAGTCACCTGCTCCGACCTCGGAGTTAC TGACTTGGTCCTCCCCAAGAGCCAGCTTTTGGGTTCCATTACTCCTGATTTGGGACTCATCCAACACCTCAAGCACCTCGATCTCTCCAACAACTTTTTG AACGGCTCTTTACCCGATTCTTTGTTCAACTCCACCGAGATGCAGGTTCTTTCCCTCTCCGGTAACGAGATCTCCGGCGAGCTGCCGGACTCCGTCGGGG GGATGAAGGGTTTGCAAGTGCTTAACCTTTCAGACAATGCATTGGCTGGTCAACTCCCCAAGAGTTTGACTGCTTTGCAAAACCTCACTGTTCTTTCTCT GAAAGCTAATTACTTCTCCGGGATTCTCCCAGCCGGCAGGTTTAATTCTGCTGAGCTGATAGATTTCTCGTCAAATCTGTTTAATGGCTCTCTGCCTCTG GAGTTCGGCGGAGAGAAACTGAAGTACCTGAACTTGTCTTACAACAAGCTGACCGGATCAATCCCGCCGGAGTTTGGTAACGCGATTCCAGAGAATGCGA CTCTCGATCTCTCCTTCAATAATCTCACCGGAGAGATTCCCGACTCTGGTTCTCTGCTGAATCAGAAAACAGAGTATTTCAAAGGAAATCTGGATCTTTG TGGGAAGCCTTTGAAGAGTTTATGTTCTATTCCTTCGACTCTCTCCAATCCGCCGAATGTTTCCAAGACTTCTCCGGCTATCGCTGTCATTCCCAAGCCG TTGGAGTCGTCGCCGGTGGATTCCACCTCATCCGGAGGCTCCAACACAAACCCGGAGGGAACCCAATCGGGAAACCAGAGCGGCGGGCTTAAACCGGGTA CAATCGTCGCAATTGCGGCGGCGGATTTCGCCGGTATCGGTGCCCTAGCTCTCATCATCCTCTACGTCTACAGGGTTAAAAAGAAGAAAGCATCAGCTGC TGCTGCGGAGGCTGCTGGAGAAGGAAAGCAGGAGGAGAGGAAGTTTCCACCTCCGGCAACGGATACAATCGTCGTCAGTTCAATAGCGACCGATCACGCG GCGAAAAAGACGTGGACGTCGTGCCTGAAAGGGAAAATCGGCGGCGGGAGTGGAGGGTACACGTCGGAATCGGCGAATTCGTCCTCGGATAGCGACCCGG AGGAACAGAACAACTTCGCCGGCGGCGACGGGAAAGGTTCAGGAGGGAAGCTGGTGATGGTGGACGGGGAGACGGAGCTGGAGATAGAAACCCTGCTGAA AGCGTCGGCCTATATTCTAGGATCAGGCAGCGGCGGCAGCGGAAGCATCGTCGGCGGCGGCGGAAGCATCGTGTATAAGGCGGTGCTGGGAGACGGGACG TCGTTCGCTGTCAGGAGGATCGGAGAACTAACCGGAGGATTGGGTGGGAAGAGAATGAAGGAATTCGAAGGACAAGTGAGGACTATAGCGAAGCTGAGGC ATCCGAATTTGCTAAAGGTTCGTGGGTTTTGTTGGGGAGATGATGAGAAGCTCGTCATCTGTGATTACATACCCGGTGGGAGTCTCGCCACCTCCGGCCA CCGGAGGGTAGGAACGTCACCGTTTCATCTGCCATTAGAGGTCCGGTTCAAGATAGCAAGAGGGTTAGCTCGGGGTCTAGCCTTCATTCACGACAGGAAA CAAGTCCACGGCAACATTAAGCCGAGCAACATTCTATTAGGACATGACATGCATCCGATCATCTCCGATTTTGGCCTAGATCGTCTAATGATCAACTTTG CTAGCAATAACAAGACGGTAATTAACTCATCCGGTCGAAATTCTGGCAGTCAGCGGTCAGTGTCCGGTACTACGCCACTAGAGCACCACATTGCTAGCAG CAACGCCAACACCAATAGTAGTATTATGACGATGGCGGCAAGTCCATACACGAGTACCCCGTCCTCTTCCTTGTCAGGACCGACTCCATACCAGGCGCCC GAGTCGTTGAAGACCCTGAAGCCGAACCCTAAGTGGGACGTCTACTCGTTTGGGGCTGTGCTGCTCGAGCTTCTAACAGGTAGGGTTTTCAGCGAGTGGG AGCTAAGCCAATGGGCGGCCACCTCATGTTCGGACGACAGAGGGTGGGTGACTAGGCTGGTTGATGTGGCGATTCGGTCCGAGGTGGAAGCGAGGGAGGA TGCTGTGGTGGCTTGTTTGAAGTTGGGGTTTGGTTGTGCTTGTTTTGTGCCGCAAAAGAGACCCTCCATGAAAGAAGCTGTCCAAGTGTTGGAAAAGATC CCTCCCCACGCTCACTTTTAA
AA sequence Show only first row Show all	>Lus10014098 pacid=23156750 polypeptide=Lus10014098 locus=Lus10014098.g ID=Lus10014098.BGIv1.0 annot-version=v1.0 MISSPFIFFSILSLFSPVSSLNRDGILLLSFKYSILGDPLSVLQTWNYDDATPCSWTGVTCSDLGVTDLVLPKSQLLGSITPDLGLIQHLKHLDLSNNFL NGSLPDSLFNSTEMQVLSLSGNEISGELPDSVGGMKGLQVLNLSDNALAGQLPKSLTALQNLTVLSLKANYFSGILPAGRFNSAELIDFSSNLFNGSLPL EFGGEKLKYLNLSYNKLTGSIPPEFGNAIPENATLDLSFNNLTGEIPDSGSLLNQKTEYFKGNLDLCGKPLKSLCSIPSTLSNPPNVSKTSPAIAVIPKP LESSPVDSTSSGGSNTNPEGTQSGNQSGGLKPGTIVAIAAADFAGIGALALIILYVYRVKKKKASAAAAEAAGEGKQEERKFPPPATDTIVVSSIATDHA AKKTWTSCLKGKIGGGSGGYTSESANSSSDSDPEEQNNFAGGDGKGSGGKLVMVDGETELEIETLLKASAYILGSGSGGSGSIVGGGGSIVYKAVLGDGT SFAVRRIGELTGGLGGKRMKEFEGQVRTIAKLRHPNLLKVRGFCWGDDEKLVICDYIPGGSLATSGHRRVGTSPFHLPLEVRFKIARGLARGLAFIHDRK QVHGNIKPSNILLGHDMHPIISDFGLDRLMINFASNNKTVINSSGRNSGSQRSVSGTTPLEHHIASSNANTNSSIMTMAASPYTSTPSSSLSGPTPYQAP ESLKTLKPNPKWDVYSFGAVLLELLTGRVFSEWELSQWAATSCSDDRGWVTRLVDVAIRSEVEAREDAVVACLKLGFGCACFVPQKRPSMKEAVQVLEKI PPHAHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	0	1
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	6.9	0.7589
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	8.6	0.7802
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Lus10019947 [exp]	11.3	0.7119
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008910 [exp]	11.6	0.7643
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	12.0	0.7279
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	17.2	0.7794
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	19.0	0.7404
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	23.5	0.7298
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	23.5	0.7291
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	24.1	0.6909

Compare expression of checked genes

Lus10014098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.