Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019815 [exp] 344 / 2e-123 ND / Lus10014101 [exp] 342 / 2e-122 ND / Lus10019813 [exp] 339 / 2e-121 ND / Lus10028949 [exp] 304 / 3e-107 ND / Lus10024445 [exp] 229 / 6e-78 ND / Lus10037860 [exp] 221 / 3e-74 ND / Lus10000191 [exp] 212 / 9e-71 ND / Lus10039879 [exp] 211 / 2e-70 ND / Lus10029851 [exp] 206 / 3e-68 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 276 / 3e-96 ND / Potri.002G158600 [exp] 274 / 2e-95 ND / Potri.002G158700 [exp] 270 / 5e-94 ND / Potri.019G100100 [exp] 265 / 1e-91 ND / Potri.014G082700 [exp] 265 / 1e-91 ND / Potri.014G081900 [exp] 256 / 4e-88 ND / Potri.014G082000 [exp] 228 / 3e-77 ND / Potri.003G126200 [exp] 224 / 1e-75 ND / Potri.017G153100 [exp] 152 / 8e-47 ND / Potri.003G126400 [exp] 141 / 1e-43 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014099 pacid=23156790 polypeptide=Lus10014099 locus=Lus10014099.g ID=Lus10014099.BGIv1.0 annot-version=v1.0 ATGGCCGCCAACATCGAGGCACAGAGCTGCAAGCCAAGTGGTTACATAACGGGGATCACTCCCCCGCCGGGGCAATGCAACCAGGGTGAAGAATCCGACT GTTGTAAGGCGGGCAAACACTACACCACCTACAAATGCTCGCCTCCGGTGACTGGCCGAACCAAGGCGACTTTGACTTGGAACAGCTTCGAGAAAGGAGG GAGTGGAGGTGGACCGTCCGAGTGCGATAACAAGTACCACCCCGATGACCATCCTGTGGTCGCGTTGTCGACCGGATGGTTCAACAACAAAAGCAGGTGT CTCAACTTTATCAACATTTATGGGAATGGGAAGAGTGTTAGGGCCATGGTGGTTGATGAGTGCGACTCTACTATGGGTTGTGATTCTGACCATGATTATC AGCCTCCTTGTCCCAACAACATCGTTGATGCATCAAAAGCTGTCTGGAAAGCATTGGGAGTGTCCGAAGATAACTGGGGTGATCTTGATATCTCTTGGTC TGATGCTTGA
AA sequence Show only first row Show all	>Lus10014099 pacid=23156790 polypeptide=Lus10014099 locus=Lus10014099.g ID=Lus10014099.BGIv1.0 annot-version=v1.0 MAANIEAQSCKPSGYITGITPPPGQCNQGEESDCCKAGKHYTTYKCSPPVTGRTKATLTWNSFEKGGSGGGPSECDNKYHPDDHPVVALSTGWFNNKSRC LNFINIYGNGKSVRAMVVDECDSTMGCDSDHDYQPPCPNNIVDASKAVWKALGVSEDNWGDLDISWSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014099 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10024210 [exp]	1.0	1.0000
					Lus10005838 [exp]	5.7	0.8390
					Lus10010697 [exp]	7.7	0.7821
AT1G50750			Plant mobile domain protein fa...		Lus10036654 [exp]	8.9	0.6063
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	8.9	0.7821
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	9.8	0.7796
AT5G20610			unknown protein		Lus10025003 [exp]	10.0	0.7821
					Lus10008327 [exp]	11.0	0.7821
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	11.8	0.7821
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	13.4	0.7636

Compare expression of checked genes

Lus10014099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.