Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15290 280 / 2e-94 ATTIC21, TIC21, CIA5, PIC1 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019814 [exp] 399 / 3e-141 AT2G15290 325 / 6e-112 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300500 [exp] 309 / 1e-105 AT2G15290 331 / 3e-114 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1) Potri.009G096300 [exp] 302 / 5e-103 AT2G15290 322 / 2e-110 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12263 [flax] [poplar] DUF3611 Protein of unknown function (DUF3611)
Representative CDS sequence Show only first row Show all	>Lus10014100 pacid=23156849 polypeptide=Lus10014100 locus=Lus10014100.g ID=Lus10014100.BGIv1.0 annot-version=v1.0 ATGCAATCGCTTCTTCTTCCCGCCGGCGTATCATCCGCCGTCACCGTGGGCGCGGCACCGTCTCTCCTCCATTTCCGATCTCGCCAGCAGCTGTGCACTC CCGCCTTATCTTCTCCGAAGCCATGCTCTTCCTTCCCATTTCTCTCCAGTTCACCATTCTCCTACGATCCCCTAAGAAGAAAAAACTTCAAATTTCCATC CCCAACGAAGATCGTTTCTTCTCCAGCATCCACCGCGTACACTTCTTCCCCAGCCGACGAATCCGAGAGAGCCAAACTCGCCCAGGTGGCGAAGAGATTG GAGAATACTTCGAGGCGATTCAAGCGTTTTGGGAGTATAGGGTTTTGGGGTCAGCTGATTTGCACTGTGGTAGCTGCTGTCATACTTTCCTTTTCGGTCG TTGCTACTGGGAAAATCACGTCTCCTGCTAGCTTCTACACTACTTCTGGTGGAATTGCAGCTGCTTTCATCTCTGTGTTCTGGTCCTTTGGGTATATTCG TCTCTCTGAGAGGCTTCGGAAGACTGCTACTGACCCTTCTAAGGCACCGCCTCGAGCTGATGTAGTGAAAGGCTTGAGAAATGGCATAATATTGAATCTG ATGGGAATGGCTGCTGCTATTCTTGGAATGCAAGCCACAGTAGGTACATTGGTGGCTAAGGCATTGACTTCTTCAGCAAACCCTTATTACCAGGGGATCG CTCCTGGATCAAGTCCAGTTCTTGCGCTGGATGTTTTCTTGGTGCAGGCATCAGCAAACACAATCCTCTCCCACTTCCTAGGGCTTCTTTTCTCCCTAGA GCTGTTGCGATCAGTTACCCTACCGCCTTCCGAAGTCACTCCTGTCCCGAGACTAGCATAA
AA sequence Show only first row Show all	>Lus10014100 pacid=23156849 polypeptide=Lus10014100 locus=Lus10014100.g ID=Lus10014100.BGIv1.0 annot-version=v1.0 MQSLLLPAGVSSAVTVGAAPSLLHFRSRQQLCTPALSSPKPCSSFPFLSSSPFSYDPLRRKNFKFPSPTKIVSSPASTAYTSSPADESERAKLAQVAKRL ENTSRRFKRFGSIGFWGQLICTVVAAVILSFSVVATGKITSPASFYTTSGGIAAAFISVFWSFGYIRLSERLRKTATDPSKAPPRADVVKGLRNGIILNL MGMAAAILGMQATVGTLVAKALTSSANPYYQGIAPGSSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEVTPVPRLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	0	1
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	1.0	0.8758
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	2.0	0.8272
AT3G27520			unknown protein		Lus10003664 [exp]	2.6	0.8081
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	3.5	0.8447
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	4.1	0.7826
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	4.5	0.8255
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	4.9	0.8310
AT1G08530			unknown protein		Lus10021985 [exp]	6.2	0.7961
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	9.0	0.8018
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	15.0	0.7270

Compare expression of checked genes

Lus10014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.