Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19460 153 / 5e-47 Reticulon family protein (.1.2) AT2G15280 150 / 1e-45 Reticulon family protein (.1.2) AT3G54120 100 / 2e-26 Reticulon family protein (.1) AT3G10915 96 / 2e-24 Reticulon family protein (.1.2.3.4.5.6) AT4G23630 93 / 8e-23 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT2G46170 92 / 1e-22 Reticulon family protein (.1.2) AT1G64090 92 / 1e-22 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 91 / 5e-22 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT3G61560 86 / 3e-20 Reticulon family protein (.1.2) AT3G10260 86 / 4e-20 Reticulon family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019812 [exp] 311 / 5e-109 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10002815 [exp] 185 / 3e-59 AT3G19460 188 / 1e-60 Reticulon family protein (.1.2) Lus10027867 [exp] 183 / 3e-58 AT3G19460 184 / 1e-58 Reticulon family protein (.1.2) Lus10027756 [exp] 103 / 3e-27 AT3G54120 181 / 1e-57 Reticulon family protein (.1) Lus10035537 [exp] 102 / 8e-27 AT3G54120 185 / 2e-59 Reticulon family protein (.1) Lus10036405 [exp] 97 / 3e-24 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10038833 [exp] 95 / 1e-23 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10041080 [exp] 95 / 2e-23 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10032451 [exp] 94 / 2e-23 AT3G18260 268 / 9e-92 Reticulon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300400 [exp] 192 / 3e-62 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.009G096200 [exp] 164 / 4e-51 AT2G15280 132 / 1e-38 Reticulon family protein (.1.2) Potri.016G110200 [exp] 122 / 8e-35 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.015G027300 [exp] 101 / 4e-26 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 100 / 8e-26 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 99 / 3e-25 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 99 / 4e-25 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.005G206800 [exp] 97 / 2e-24 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.019G057400 [exp] 96 / 3e-24 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.014G091200 [exp] 96 / 7e-24 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10014102 pacid=23156828 polypeptide=Lus10014102 locus=Lus10014102.g ID=Lus10014102.BGIv1.0 annot-version=v1.0 ATGGAAGGTAGCTCCGTCAGTACATTCCCTCATCCTCGTCCCATTTCCGTCCACCAGCTGCTTGGCGGGGGTTCAGTCGCTGATGTGCTGCTGTGGCTGA GATTGGGCGGGAGCTTGACGTTGTTATTGGCTTCGACGATTGCGTGGATTCTGTTCGAGATAGCGGGTTACAGTTTGCTGACCTTCGTGGCGAATGTGTT GTTCCTCCTCGCCGCAATTCTCTTCCTGTGGGCGAAATCTGCTTCTCTTCTCAATCGGCCACTGCCGCCAATTCCTGATCTGAAAATAACTGAGGAGACC ATTGACAAGGTTGCTCAAGTTCTTCAAGTTTATGTCAACCGTGTATTAGCAATTGGATCTGACATCGCAATTGGAAGAAATTCAAAAGTTTTCTTACAGG TCGCTTTTACGTTGTGGATCGTTTCTTATCTCGGTAGCCTCTGCGGTTTCCTTACTTGTGTGTACATTGGGATTCTTCTGAGTCTTTCAATCCCGGTGCT TTATGACAAATACCAGCACCAGATTGATGAAAAGCTTCTTGTAGCACAGACAATTCTTGAAGCTCAGCTTAGGAAAATTGATCATTTTCTGAAGAAAGTT CCACTGCCATCAAACAAGGAAAAGAAGGTTCAATAG
AA sequence Show only first row Show all	>Lus10014102 pacid=23156828 polypeptide=Lus10014102 locus=Lus10014102.g ID=Lus10014102.BGIv1.0 annot-version=v1.0 MEGSSVSTFPHPRPISVHQLLGGGSVADVLLWLRLGGSLTLLLASTIAWILFEIAGYSLLTFVANVLFLLAAILFLWAKSASLLNRPLPPIPDLKITEET IDKVAQVLQVYVNRVLAIGSDIAIGRNSKVFLQVAFTLWIVSYLGSLCGFLTCVYIGILLSLSIPVLYDKYQHQIDEKLLVAQTILEAQLRKIDHFLKKV PLPSNKEKKVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	5.1	0.8975
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	8.2	0.9123
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	8.8	0.9039
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	10.2	0.9093
AT4G27120			unknown protein		Lus10011161 [exp]	11.1	0.9100
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	11.8	0.8935
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	12.9	0.8692
AT5G03460			unknown protein		Lus10023922 [exp]	13.4	0.8935
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008021 [exp]	17.3	0.9117
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	19.4	0.8946

Compare expression of checked genes

Lus10014102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.