Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19450 529 / 0 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 508 / 0 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT2G21890 379 / 7e-131 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 374 / 6e-129 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G39330 372 / 2e-128 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37970 350 / 1e-119 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 332 / 1e-112 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 320 / 5e-108 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT1G72680 282 / 5e-93 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G63620 93 / 9e-21 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019811 [exp] 730 / 0 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 634 / 0 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 634 / 0 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002089 [exp] 358 / 1e-122 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 357 / 1e-122 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 355 / 2e-121 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 353 / 8e-121 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10017285 [exp] 321 / 4e-108 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 319 / 2e-107 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095800 [exp] 550 / 0 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G307200 [exp] 380 / 2e-131 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G065300 [exp] 368 / 7e-127 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.016G078300 [exp] 366 / 5e-126 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G268600 [exp] 360 / 8e-124 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 360 / 1e-123 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 357 / 1e-122 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 321 / 3e-108 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 317 / 2e-106 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 302 / 6e-101 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014104 pacid=23156761 polypeptide=Lus10014104 locus=Lus10014104.g ID=Lus10014104.BGIv1.0 annot-version=v1.0 ATGGGTAGCATGGAAAAGGGAAGAACCATCGTTGGCTGGGCAGCTACTGACCCTTCCGGCGTCCTCGCTCCTCAAACTTTCACTCTCAGGAACACGGGCC CAGAAGATGTGTTCATCAAAGTTATGTGCTGCGGAATCTGCCACACTGATATCCACCAAGTCAAGAACCACCTCGGCATGTCTCGTTACCCCATGGTTCC TGGACATGAAATGGTTGGCGAGGTATTGGAAGTGGGATCGGAGGTGACCAAGTTCAAAACCGGAGACATAGTCGGCGTCGGACTCCTTGTCGGATGCTGC CGGAGCTGCCGCGCATGTGATGCTGACATCGAGCAGTACTGCAACAAGAAAATCTGGTCCTACAACGACGTCTACACCGACGGGAACCCAACTCAAGGAG GCTTCGCCGAGTCGATGGTTGTCGACCAGAAGTTTGTAGTGAAGATCCCAGAAGGGATGTCGCCGGAGCAAGCAGCGCCATTGCTATGCGCAGGGGTGAC GGTTTACAGTCCTCTGAACCACTTCGGGTTAAAGAAGAGTGGGATGAAAGGAGCAATATTGGGGCTAGGAGGAGTTGGCCACATGGGAGTCAAGATCGCC AAAGCAATGGGACACCATGTGACTGTAATTAGCTCCTCGGATAAGAAAAAGATCGAAGCAGTGGATCACCTCGGAGCTGATGAGTATTTGGTCAGCTCGG ATTCGGCAACAATGGAACAAGCTGCTGATTCGTTCGATTACATAATCGACACTGTCCCTGTGAACCACCCGCTCGAGCCTTACCTCTCGCTGTTGAAGGT TGATGGGAAGTTGATCTTGATGGGTGTGATCAACACCCCTCTTCAGTTCATAAGTCCCATGGTGATGCTAGGGAGGAAGGTGATAACAGGGAGCTTCATA GGGAGCATGAAGGAAACAGAGGAGATGCTTGAGTTCTGCAAGGATGAAGGGTTGAGCTCCATGATTGAGGTGGTGAAGATGGACTATGTGAATACTGCGT TCGAGCGGCTGGAGAAGAATGATGTACGGTATAGGTTCGTGGTTGATGTTGCAGGAAGTGATCTTCAGCAGCCGTAA
AA sequence Show only first row Show all	>Lus10014104 pacid=23156761 polypeptide=Lus10014104 locus=Lus10014104.g ID=Lus10014104.BGIv1.0 annot-version=v1.0 MGSMEKGRTIVGWAATDPSGVLAPQTFTLRNTGPEDVFIKVMCCGICHTDIHQVKNHLGMSRYPMVPGHEMVGEVLEVGSEVTKFKTGDIVGVGLLVGCC RSCRACDADIEQYCNKKIWSYNDVYTDGNPTQGGFAESMVVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLNHFGLKKSGMKGAILGLGGVGHMGVKIA KAMGHHVTVISSSDKKKIEAVDHLGADEYLVSSDSATMEQAADSFDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKVITGSFI GSMKETEEMLEFCKDEGLSSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGSDLQQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	3.5	0.9676
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	3.5	0.9713
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	6.3	0.9597
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	10.2	0.9603
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	10.7	0.9666
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	11.5	0.9495
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	11.6	0.9319
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	12.2	0.9582
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10019841 [exp]	12.2	0.9528
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	13.0	0.9549

Compare expression of checked genes

Lus10014104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.