Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 454 / 4e-157 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 446 / 5e-154 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 440 / 2e-151 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 434 / 2e-149 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 295 / 2e-95 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 276 / 2e-88 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT4G15550 261 / 4e-82 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05680 254 / 2e-79 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 253 / 2e-79 UDP-Glycosyltransferase superfamily protein (.1) AT4G14090 252 / 9e-79 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019808 [exp] 860 / 0 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 734 / 0 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10027862 [exp] 524 / 0 AT4G15480 414 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 265 / 1e-83 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006353 [exp] 259 / 3e-81 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 253 / 8e-79 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 252 / 1e-78 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 235 / 5e-72 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 234 / 1e-71 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095100 [exp] 484 / 1e-168 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 474 / 1e-164 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095300 [exp] 473 / 3e-164 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095500 [exp] 305 / 9e-99 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.007G049600 [exp] 303 / 2e-98 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 296 / 1e-95 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.006G055600 [exp] 294 / 9e-95 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.017G032300 [exp] 281 / 7e-90 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G052500 [exp] 281 / 1e-89 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.017G032500 [exp] 274 / 3e-87 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014105 pacid=23156789 polypeptide=Lus10014105 locus=Lus10014105.g ID=Lus10014105.BGIv1.0 annot-version=v1.0 ATGGGATCCTCCTCGTCGGAGAAAGTCCTCCACGTGCTCCTCGTCTGCTTCCCCGGCCAAGGCCACATCAACCCCTTCCTCCGCCTTGCCAACCTCCTCG CCTCCCACGGCCTCCTCGTCACTTTCTGCATCAACAAAACCACCGGCCTCAAGATGAAAATGTCCGACAACAAATCCGCCGTCCAGTTTGACTTCTTCGA CGAGGGCCTCGACGAAGAGCAGATTAAGGTCATACCGCTCGACCAACTTATGAACCGGCTCGAAGAAACCGGTCGCAAGGCATTACCTGAAATCATCGAA AAACACTCTGAAAACGGACAGCCTGTCTCCTGCCTAGTCAGCAACCCGTTCCTTCCTTGGGTGTCCGACGTGGCCGTCTCGCTGGACATCCCGTCAGCAA TCCTCTGGATGCAGTCATGCGCCTGCTTCTCTTCCTACTACCACTACCACAACAAACTCGCCCGTTTCCCAACTGAAAACGAACCCGAATGCGACGTCGT TTTGCCGTCTATGCCCGTTCTGAAACACGACGAAGTCCCCAGCTTTCTCCACCCTTCCACGCCGTATCCTTTCCTGGCGACGGCAATCCTGGGGCAGTTT GCTTACCTGGACAAAGTCTTCTGCATACTAATGGAAACTTTCCAGGAACTAGAGCCGGAGATTATCCGCCACGTGTCCACTTTGCACAATAATATCAAGC CGGTGGGCCCGCTGTGTCTCACCGGGAAAATCAGCGGTGGGGACCTCATGGAAGTAGACGACGACTGCATCAAGTGGCTGGACGGGAAGGATGAGTCGTC TGTGGTGTACATCTCGATGGGGTCCATCGTCTCGATGGACCCCACTCAGCGAGAGGAGTTTGCATACGGGTTGATAAACTCCGGTTTACCCTTCTTGTGG GTGGTCCGACCCGGTCACGGAGAAAGTGATGGACCTGGCCACCAAATCATCTTTCCCTCGGTACTGGAAGAGAAAGGGAAAATGGTTAGGTGGGCCCCGC AGGAGGAGGTGCTGAGGCACCCTGCAGTGGCGTGTTTCGTGACGCACTGCGGGTGGAACTCGACCATGGAAGCGATCAGTGCAGGGAAGCCCGTGGTGAC GTTTCCACAATGGGGAGACCAAGTGACAGACGCGAAGTTTTTAGTGGATGTGTTTGAGGTAGGCGTGAGGATGGGGAGGGGGGCCACGACGACGAAGATG GTGAAGAGGGAGGAAGTGGAGAGGTGTGTGGTGGAAGCGACGGTGGGGGAGAAGGCGGAGATGTTGAGGAGGAACGCGGCGAGGTGGAAGAAGGAAGCGG AGGCGGCTGTAGCAGAAGATGGGTCGTCGACGAGGAGTTTGTTGGAGTTTGTGGAGGAGGTTAAGAAGAGGAATGGTACGACGTCGTAG
AA sequence Show only first row Show all	>Lus10014105 pacid=23156789 polypeptide=Lus10014105 locus=Lus10014105.g ID=Lus10014105.BGIv1.0 annot-version=v1.0 MGSSSSEKVLHVLLVCFPGQGHINPFLRLANLLASHGLLVTFCINKTTGLKMKMSDNKSAVQFDFFDEGLDEEQIKVIPLDQLMNRLEETGRKALPEIIE KHSENGQPVSCLVSNPFLPWVSDVAVSLDIPSAILWMQSCACFSSYYHYHNKLARFPTENEPECDVVLPSMPVLKHDEVPSFLHPSTPYPFLATAILGQF AYLDKVFCILMETFQELEPEIIRHVSTLHNNIKPVGPLCLTGKISGGDLMEVDDDCIKWLDGKDESSVVYISMGSIVSMDPTQREEFAYGLINSGLPFLW VVRPGHGESDGPGHQIIFPSVLEEKGKMVRWAPQEEVLRHPAVACFVTHCGWNSTMEAISAGKPVVTFPQWGDQVTDAKFLVDVFEVGVRMGRGATTTKM VKREEVERCVVEATVGEKAEMLRRNAARWKKEAEAAVAEDGSSTRSLLEFVEEVKKRNGTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10014105 [exp]	0	1
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	5.8	0.9780
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	6.2	0.9795
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	8.5	0.9762
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	11.0	0.9761
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	13.0	0.9741
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	13.0	0.9758
AT3G54200			Late embryogenesis abundant (L...		Lus10032671 [exp]	13.5	0.9748
AT1G20925			Auxin efflux carrier family pr...		Lus10016046 [exp]	15.9	0.9681
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	16.1	0.9754
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	17.5	0.9738

Compare expression of checked genes

Lus10014105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.