Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 227 / 3e-75 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 213 / 2e-69 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 67 / 3e-14 Plant basic secretory protein (BSP) family protein (.1) AT2G42900 44 / 3e-05 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019807 [exp] 434 / 2e-156 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 269 / 2e-91 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 209 / 7e-68 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 205 / 3e-66 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 203 / 2e-65 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 202 / 5e-65 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 200 / 2e-64 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 201 / 5e-64 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 197 / 3e-63 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 261 / 1e-88 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 253 / 3e-85 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 250 / 3e-84 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 241 / 1e-80 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 239 / 6e-80 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10014106 pacid=23156792 polypeptide=Lus10014106 locus=Lus10014106.g ID=Lus10014106.BGIv1.0 annot-version=v1.0 ATGCCGACAAAAACACAATCTCTTCTCCAGTTCGCCTTACTACTAACGGCTGTCCTCATATCCACTCAGATCCCTGTTGGCGGCGCCGTCGAATACTCCG TCACGAACAGAGCCGTTGCCACCCCAGGAGGCGCCCGCTTCGACAGAGAACTCGGCGCAGACTACAGCCGCCAGCTCCTCTCCAAAGCCACGGAATTCAC CTGGGCCACTTTCGGACAGGACAAAAACCCGGCAGACAGAAAGCCCATTAAGCGAGTCAGCCTGTTCATCGACGACACCGACGGCGTAGCTTACGTGACC AACAGCGGTGAGATCCACGCGAGCGGCAGGTGGATCAGAGACATCCCTCCGCCTCCGAATTTCGACATAACGAGGGACTTCGAGGGCGTGATGTACCACG TGATAGCGAACGTGTGGCAGTGGAACGGGAACGGCAAGGCGTCGGTCAACCTGACCGAAGGGATCGCGGATTTCGTGAGGCTGAAGGCTAATCTGGCGCC GTACTACTGGGTGAAGCCCGGGGAAGGGGACCAGTGGGACGAAGGGTACGACGTTACGGCGAGGTTTTTGGACTACTGCGACGGGTTGAGAAGTGGGTTC GTTGCTGAGCTGAATAAGAAGATGAGACGTGGGTATAATGATAGGTTCTTTCGGGAGTTGACTGGGAAGAGCGTTGGCCATCTTTGGAGGGATTATAAGG CCAAATACGCTAAATAA
AA sequence Show only first row Show all	>Lus10014106 pacid=23156792 polypeptide=Lus10014106 locus=Lus10014106.g ID=Lus10014106.BGIv1.0 annot-version=v1.0 MPTKTQSLLQFALLLTAVLISTQIPVGGAVEYSVTNRAVATPGGARFDRELGADYSRQLLSKATEFTWATFGQDKNPADRKPIKRVSLFIDDTDGVAYVT NSGEIHASGRWIRDIPPPPNFDITRDFEGVMYHVIANVWQWNGNGKASVNLTEGIADFVRLKANLAPYYWVKPGEGDQWDEGYDVTARFLDYCDGLRSGF VAELNKKMRRGYNDRFFRELTGKSVGHLWRDYKAKYAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	0	1
					Lus10013984 [exp]	1.4	0.7822
					Lus10042417 [exp]	4.9	0.7821
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	6.0	0.8200
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	6.3	0.7501
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	6.5	0.7517
AT4G28290			unknown protein		Lus10018592 [exp]	21.4	0.7498
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	22.0	0.7657
AT5G38700			unknown protein		Lus10025041 [exp]	23.4	0.7031
AT5G65600			Concanavalin A-like lectin pro...		Lus10027340 [exp]	25.0	0.7049
					Lus10037930 [exp]	26.8	0.7271

Compare expression of checked genes

Lus10014106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.