Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 215 / 9e-70 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 194 / 2e-61 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 55 / 1e-09 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019805 [exp] 318 / 6e-110 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10019804 [exp] 311 / 9e-108 AT2G15220 180 / 2e-57 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 234 / 5e-77 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 231 / 8e-76 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 200 / 1e-63 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 199 / 3e-63 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 195 / 2e-61 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 187 / 1e-58 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 186 / 8e-58 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 234 / 3e-77 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 232 / 3e-76 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 223 / 7e-73 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 223 / 1e-72 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 199 / 2e-63 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 56 / 1e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10014107 pacid=23156830 polypeptide=Lus10014107 locus=Lus10014107.g ID=Lus10014107.BGIv1.0 annot-version=v1.0 ATGTCTCGTAACAATAACGTTACTCATGTCACATTTGCCAGCTGGCTTCTACTTCTGACGTCACTCGCAGCTAATAAGGCCACCGCCGTTTATTTCACCG TGACCGACAACTCCCCTGACTCCAATGGTGGGAGTAGGTTCGAGAGCTCCATAGGAACCGATGGAGCGAAGCAGGACATGTCATCCGCCACGTCATTCAT ATGGCAGACCTTCCAGCAGTCCGGTCCCCCAAAGGAAATTGGCCCGGTGGGGTTGTCGATCGAGGACATGGGCGGAGTGGCATACACTTCGATCCCGGGG TACGTGATCCACGTCAGCGCAGGGTACATCGGGAGCTACGAGGGGGACGTGGAGGAGGAGTTCAAAGGCGTGGTGTACCACGAGATGACGCACGTGTGGC AGTGGTTGGGGAACGGACAGGCTCCCAGCTGGTTGATTGAAGGGATTGCGGATTACGTGAGGCTGAAGGCTAATCTCCCCGGGAGGAACTGGGTGGGGCC AGGGGAAGGTGACCGGTGGGACCAAGGGTATTCTGTTACGGCCAGGTTTTTGGATTACATCGGCGGGTTGAAGAGTGGTTTTGTTGCTGAGTTGAATGAG ATGATGAAGGATGGGTATGGTGATGACTTTTTTCAGGAGTTGACCGGGCTGAGCGTTGACCAGCTGTGGAGTGATTACAAGGAACATAAGGCTAACCTCG CACCGAGCCACTGGGTGGGACCGGGGGGAGGAGACCGGTGGGACCAAGGGTACGATGTTACGGCGAGGTTTTTGGATTACTGTGAAGGGTTGAGGAGTGG GTTCGTGGCTGAGCTGAATGAGAAGATGAAGGGTGGTTATAGTGTTGGGTTCTTTCAGGATTTGTGGGAAGAGCGTTGA
AA sequence Show only first row Show all	>Lus10014107 pacid=23156830 polypeptide=Lus10014107 locus=Lus10014107.g ID=Lus10014107.BGIv1.0 annot-version=v1.0 MSRNNNVTHVTFASWLLLLTSLAANKATAVYFTVTDNSPDSNGGSRFESSIGTDGAKQDMSSATSFIWQTFQQSGPPKEIGPVGLSIEDMGGVAYTSIPG YVIHVSAGYIGSYEGDVEEEFKGVVYHEMTHVWQWLGNGQAPSWLIEGIADYVRLKANLPGRNWVGPGEGDRWDQGYSVTARFLDYIGGLKSGFVAELNE MMKDGYGDDFFQELTGLSVDQLWSDYKEHKANLAPSHWVGPGGGDRWDQGYDVTARFLDYCEGLRSGFVAELNEKMKGGYSVGFFQDLWEER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10014107 [exp]	0	1
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10026749 [exp]	1.4	0.8842
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	2.4	0.8172
					Lus10010248 [exp]	4.0	0.7588
					Lus10039943 [exp]	6.7	0.7804
					Lus10026869 [exp]	8.9	0.7162
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10035834 [exp]	9.4	0.5814
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Lus10005921 [exp]	16.6	0.7437
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	17.9	0.7277
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	18.7	0.6978
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	21.6	0.7031

Compare expression of checked genes

Lus10014107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.