Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 367 / 1e-123 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 332 / 5e-110 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57240 326 / 1e-107 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT4G16260 309 / 5e-101 Glycosyl hydrolase superfamily protein (.1) AT5G56590 234 / 2e-70 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 227 / 8e-69 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 221 / 3e-65 O-Glycosyl hydrolases family 17 protein (.1) AT5G20390 213 / 6e-64 Glycosyl hydrolase superfamily protein (.1) AT1G77780 210 / 1e-62 Glycosyl hydrolase superfamily protein (.1) AT5G20340 210 / 1e-62 BG5 beta-1,3-glucanase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019801 [exp] 546 / 0 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 539 / 0 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 400 / 1e-136 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 393 / 2e-133 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10019802 [exp] 385 / 4e-132 AT2G15220 187 / 3e-59 Plant basic secretory protein (BSP) family protein (.1) Lus10014110 [exp] 382 / 6e-130 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 298 / 1e-96 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 290 / 1e-93 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10019800 [exp] 248 / 7e-79 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 414 / 4e-142 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 395 / 1e-134 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 392 / 1e-133 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 358 / 4e-120 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 333 / 1e-110 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 327 / 9e-108 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 313 / 2e-102 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 280 / 4e-90 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 244 / 8e-76 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 240 / 4e-74 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10014108 pacid=23156837 polypeptide=Lus10014108 locus=Lus10014108.g ID=Lus10014108.BGIv1.0 annot-version=v1.0 ATGGAAACCATCCTTCCAGTTCTCTTCACAACAACAGCATTGTTACTAGCCACACAAGCAACACCGGCGGCGACAGAGTACGCCGTCATCAACAACGCTG GCGACACCAAAGGGGGCGTCCTCTTCTCTTCCCGAATCGGAGAACAGTATGCCAAAGACACAATGGAAGCTGCTTCCAATTTCATCTTCAAGATCTTCAA CCAACCTGACCCAGCACGCCGGAAACCCGTCACGAATGTCATCGCCGTCATTGACGGCAACACAACTGACGCCGGGTTTTATGCATCTGACTACGACTTC CACATCGGAGCGAAATACCTGGCGAACTTCACCGGTGGCGACGCCAAGTTCGGATTCTCCGGGTTGGTTTACCGGTACATGGCGTACGTTTGGGGATGGG ACGGAGGAGGGAAAGCGCCGGCGGGACTCCGGTCGGGGATTGGGGAGTATGTGAGGCTGAAGGCCGGTTTCGGCCCGCGGAGATATTGGGCTGGGAAGAG AGATGTTGGAACCTATTGGGCTGAAGGAGGGGAAATGACGGCCCGGTTTCTGAACTACTGTGTTGGGCTAAGGAAAGGGTTTGTTTGGGAGATGAATGAG AGGATGAAGGGAGAATATAGTGATGGGATTTTTAAGATTTTGCTTGGGAAGGACGTTGATCAGTTGTGGCATGACTATAAGGCTAAGTATGATGCCCAAA TTGGAGTGTGCTATGGGATGCTAGGCAGAGTACCACCGCCACGAGAAGTCATAGCCCTATACAAACAAAACAACATCCGAAGGATGCGACTCTACGACCC GAACCAAGCTGCTCTCCAGGCCCTGCGAGGCACCAACATCGAGCTAATCCTTGGTGTACCCAACGACCAACTCCGACCCGTCGCAACCAGCCAGGCCAAC GCCAATTCCTGGGTCCGAACCAATGTAGTCAAGTATGCCAACAATGTCCGATTCCGGTACATTGCGGTCGGGAACGAGGTCCAACCCCGTGACAACCGAT ATGCCCCGTTCCTTGTCCAAGCTATCCGAAACATCCAAACTGCTATCAACTCAGCAAAGCTAGGGTCGCGAATCAAGGTCTCCACAGCCTTCGATTATGG GATCATGGGCAAGTCCTCCCCGCCTTCCCAAGGGTCTTTCAAGGCCGAGTACAAGAATCTTTTGGATCCGATCCTTCGTCATTTAGCGGCGAACAGGTCT CCGATGCTATTAAACATGTATCCATTTTTCAGCTATCGTGATAACATGGGTCAAATCCGACGAGATTACGCCCTGTTTACCGCTCCACCGGGTTTGGTAC CTGACCCGCCACTTAAATACAGTAACCTGTTTGACGCAATGTTGGATGCTACTTACTCTGCTTTGGAAAAAGTACGGATGGGGAGTCTGAATATTGTGGT GTCAGAGACTGGTTGGTCTACAGCCGGAGGTGGGCCGTCGACGACGTTGGAAAATGCAAGGATTTATAATAATAATTTGATCCAACATGTTAAGAGAGGG AGTCCGAAGCGGCCAAATAGACCAATTGAAACGTATATATTTGCGATGTTTGATGAAGTTGATAAGAGTCCGGAGTTGGAGAAACACTTTGGGTTGTTTA GTGTTAATAAGCAGCGCAAGTATCCGATTAAGCTAAACTCAAAGTGTAGTAAATTAGCTAATGTTACTGAGGATACTGCCCTGGACACATAA
AA sequence Show only first row Show all	>Lus10014108 pacid=23156837 polypeptide=Lus10014108 locus=Lus10014108.g ID=Lus10014108.BGIv1.0 annot-version=v1.0 METILPVLFTTTALLLATQATPAATEYAVINNAGDTKGGVLFSSRIGEQYAKDTMEAASNFIFKIFNQPDPARRKPVTNVIAVIDGNTTDAGFYASDYDF HIGAKYLANFTGGDAKFGFSGLVYRYMAYVWGWDGGGKAPAGLRSGIGEYVRLKAGFGPRRYWAGKRDVGTYWAEGGEMTARFLNYCVGLRKGFVWEMNE RMKGEYSDGIFKILLGKDVDQLWHDYKAKYDAQIGVCYGMLGRVPPPREVIALYKQNNIRRMRLYDPNQAALQALRGTNIELILGVPNDQLRPVATSQAN ANSWVRTNVVKYANNVRFRYIAVGNEVQPRDNRYAPFLVQAIRNIQTAINSAKLGSRIKVSTAFDYGIMGKSSPPSQGSFKAEYKNLLDPILRHLAANRS PMLLNMYPFFSYRDNMGQIRRDYALFTAPPGLVPDPPLKYSNLFDAMLDATYSALEKVRMGSLNIVVSETGWSTAGGGPSTTLENARIYNNNLIQHVKRG SPKRPNRPIETYIFAMFDEVDKSPELEKHFGLFSVNKQRKYPIKLNSKCSKLANVTEDTALDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	1.0	0.9573
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	2.4	0.9379
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	4.2	0.9411
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	6.0	0.9374
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	6.3	0.9353
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	6.9	0.9088
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	7.0	0.9308
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	8.0	0.9272
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	8.5	0.9353
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	9.0	0.9197

Compare expression of checked genes

Lus10014108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.