Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 346 / 1e-118 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 318 / 8e-108 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 313 / 7e-106 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 286 / 5e-95 Glycosyl hydrolase superfamily protein (.1) AT1G77780 214 / 7e-67 Glycosyl hydrolase superfamily protein (.1) AT5G20390 206 / 1e-63 Glycosyl hydrolase superfamily protein (.1) AT5G20340 202 / 2e-62 BG5 beta-1,3-glucanase 5 (.1) AT5G56590 206 / 3e-62 O-Glycosyl hydrolases family 17 protein (.1) AT5G20330 196 / 7e-60 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT2G01630 195 / 4e-59 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019801 [exp] 597 / 0 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 513 / 0 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 372 / 5e-129 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 362 / 5e-125 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014110 [exp] 349 / 3e-120 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 281 / 7e-93 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 274 / 1e-90 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 250 / 3e-77 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10019800 [exp] 233 / 1e-75 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 392 / 9e-137 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 373 / 2e-129 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 370 / 3e-128 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 342 / 4e-117 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 324 / 2e-110 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 322 / 1e-108 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 303 / 6e-102 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 266 / 8e-88 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 229 / 7e-73 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 229 / 8e-73 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10014109 pacid=23156770 polypeptide=Lus10014109 locus=Lus10014109.g ID=Lus10014109.BGIv1.0 annot-version=v1.0 ATGGGTTCACTTTCAACAGCTGTGTTGGTCATGGCTCTGCTTCTACTTGCAATTCTTGACACTACCTCTGCCCAGATTGGAGTTTGTTACGGGATGCTAG GCAGAGTGCCACCACCACCTGAAGTCATAGCTCTATACAACCAAAACAACATCCGAAGGATGCGACTCTACGACCCCAACCCGGCCGCCCTCCAGGCCCT TCGAGGAACCAACATCGAGCTCATTCTCGGCGTCCCCAACGATCGACTCCAGTTCGTTGCCGCCAGCCAGGCCAACGCTGACTCGTGGGTCCGAACCAAT GTCGTTAACTATGGCAATGTTCGGTTCCGGTACATTGCGGTTGGGAACGAGGTTCAACCGGGTGACAACCGGTACGCCCCGTTTCTCGTTCGTGCCATCC AGAATATACAAAATGCAATCAACTCGAATAATCTCGGGTCGAGGATCAAAGTCTCCACGGCCTTTGATTACGGGATCATGGCCCAGTCCTCCCCGCCTTC CCAAGGGTCGTTCAAGGGAGAGTACAACAATCTTCTGAACTCAATCCTCCGTCATTTAGCAGCTAACAGGTCACCGTTGTTATTAAACTTGTATCCATTT TTCAGCTACCGTGACAACATGGCTCAGATCCGACGCGATTACGCACTCTTTACTGCTCCACTGGGTTTGGTACAAGACGGACCGCGTAGCTACAATAACT TATTCGACGCAATGTTGGATGCTACTTACTCCGCTCTGGAAAAAGTAGGGATGGGGAGTCTGAACATTGTGGTGTCGGAGACTGGGTGGTCGAGTGCCGG AGGTGGGCCAGCAACAACGACCGAAAACGCTAGGATTTATATTAATAATTTGGTTCAACATGTCAAGAGAGGAACCCCAAAGCGGCCAAACGGACCGATT GAAACCTATATCTTCGCAATGTTTGACGAAGAGAATAAGAGCCCCGAGTTGGAGAAACATTTCGGGTTGTTTGGTGTTAATAAGCAGCCCAATTATCAGA TGAACCTAAACTGA
AA sequence Show only first row Show all	>Lus10014109 pacid=23156770 polypeptide=Lus10014109 locus=Lus10014109.g ID=Lus10014109.BGIv1.0 annot-version=v1.0 MGSLSTAVLVMALLLLAILDTTSAQIGVCYGMLGRVPPPPEVIALYNQNNIRRMRLYDPNPAALQALRGTNIELILGVPNDRLQFVAASQANADSWVRTN VVNYGNVRFRYIAVGNEVQPGDNRYAPFLVRAIQNIQNAINSNNLGSRIKVSTAFDYGIMAQSSPPSQGSFKGEYNNLLNSILRHLAANRSPLLLNLYPF FSYRDNMAQIRRDYALFTAPLGLVQDGPRSYNNLFDAMLDATYSALEKVGMGSLNIVVSETGWSSAGGGPATTTENARIYINNLVQHVKRGTPKRPNGPI ETYIFAMFDEENKSPELEKHFGLFGVNKQPNYQMNLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	4.7	0.8364
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	21.2	0.6892
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	23.0	0.6984
					Lus10014377 [exp]	23.0	0.7450
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	25.4	0.6618
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	53.0	0.6744
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	55.7	0.7014
					Lus10000478 [exp]	99.0	0.6601
					Lus10039654 [exp]	104.5	0.6481
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	110.7	0.6122

Compare expression of checked genes

Lus10014109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.