Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 338 / 4e-116 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 301 / 2e-101 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57240 290 / 3e-97 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT4G16260 280 / 2e-93 Glycosyl hydrolase superfamily protein (.1) AT5G56590 223 / 6e-69 O-Glycosyl hydrolases family 17 protein (.1) AT2G26600 217 / 4e-68 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 206 / 7e-64 Glycosyl hydrolase superfamily protein (.1) AT5G20330 204 / 1e-63 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT5G20390 202 / 8e-63 Glycosyl hydrolase superfamily protein (.1) AT2G01630 203 / 9e-63 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019800 [exp] 382 / 7e-135 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 362 / 2e-122 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 346 / 3e-119 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 345 / 8e-119 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10002807 [exp] 306 / 3e-103 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 300 / 5e-101 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10031037 [exp] 275 / 5e-91 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 269 / 6e-89 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10010091 [exp] 251 / 3e-78 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057400 [exp] 348 / 8e-120 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 342 / 1e-117 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 325 / 5e-111 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 314 / 2e-106 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 300 / 3e-101 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 301 / 6e-101 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 297 / 7e-100 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 275 / 1e-91 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 229 / 5e-73 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 223 / 1e-71 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10014110 pacid=23156769 polypeptide=Lus10014110 locus=Lus10014110.g ID=Lus10014110.BGIv1.0 annot-version=v1.0 ATGCTTGGAGACAACCTACCACCGGCAACCGACGTCGTATCCCTCTACTACCAATACAAGATCCGCCGGATGCGGATCTACGACCCGAATCTAGCCGCCC TCCAAGCCCTAAACGGGTCCGGCATCGAACTCATCCTCGGCCTCCCCAACGACCAACTCCAATCAATCGCATCAAGCCAAGCCGCCGCCGATGCCTGGGT CCAAACCAATGTCCTCAACCACCTCCCCGGAGTCAGATTCCGTTACATCGCTGTCGGAAATGAAGTCAGACCCGCCGACCCGTTCGCCCAATTCCTCTAT CCAGCAATGGTCAACATCCAAAACTCCATCGGCCGATCTCCAGCGGCCAACGGAATCAAAGTCTCCTCCGCATTCATCTACGGCATCATCGGAGTCTCTT ACCCGCCATCTCAGGGTGCTTTCAACAAAGATTTCTGGCCGATCGTCGAACCCATTCTCAAATTCTTGGTCAAGAACAGATCCCCTCTGCTTCTAAACGT GTACCCGTTTTTTGCCTACTTATTTAATCCGGGTCAGATTAGATTAGACTACGCTCTGTTCACGGCTCCAGCCGGGTTGGTACCCGATCCGCCGCTGAGC TACGGTAATCTGTTCGATGCCATGGTGGACGCGGCGTACTCTGCTTTGGAGAAGGCTGGGGCAGGGGAACTGAAGATTGTGGTGGCGGAGACGGGTTGGA CGACGGACGGCGCCGGTAATGCAACGACGGTAGAGAATGCGAGGCTTTATAATAACAATTTAGTGAAGCATGTGATGGGAGGGACGCCGAAGCGGCCAGG GAAGGAGATTGAGACGTATATATTTGGGTTGTTTGACGAGGATTTGAAGTCGCCGGAGACAGAGAAGCATTGGGGAGTGTTTAGTCCCGATAAGAATCTT AAGTATCCGATGAATTTCAGAACATGA
AA sequence Show only first row Show all	>Lus10014110 pacid=23156769 polypeptide=Lus10014110 locus=Lus10014110.g ID=Lus10014110.BGIv1.0 annot-version=v1.0 MLGDNLPPATDVVSLYYQYKIRRMRIYDPNLAALQALNGSGIELILGLPNDQLQSIASSQAAADAWVQTNVLNHLPGVRFRYIAVGNEVRPADPFAQFLY PAMVNIQNSIGRSPAANGIKVSSAFIYGIIGVSYPPSQGAFNKDFWPIVEPILKFLVKNRSPLLLNVYPFFAYLFNPGQIRLDYALFTAPAGLVPDPPLS YGNLFDAMVDAAYSALEKAGAGELKIVVAETGWTTDGAGNATTVENARLYNNNLVKHVMGGTPKRPGKEIETYIFGLFDEDLKSPETEKHWGVFSPDKNL KYPMNFRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	0	1
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039313 [exp]	1.4	0.7763
					Lus10023536 [exp]	6.3	0.7626
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	9.8	0.7492
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	12.6	0.7249
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10029647 [exp]	22.5	0.6721
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	27.0	0.6873
					Lus10028460 [exp]	28.5	0.7111
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	28.6	0.6443
					Lus10038704 [exp]	29.0	0.7346
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	30.6	0.6547

Compare expression of checked genes

Lus10014110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.