Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 223 / 4e-68 Protein of unknown function (DUF1624) AT5G27730 209 / 1e-62 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019798 [exp] 374 / 6e-128 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10039223 [exp] 361 / 1e-122 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 285 / 1e-92 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10021514 [exp] 211 / 3e-63 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10010030 [exp] 207 / 1e-61 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10022615 [exp] 206 / 5e-61 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10000090 [exp] 164 / 2e-48 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10036333 [exp] 153 / 4e-43 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10020653 [exp] 117 / 1e-28 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136700 [exp] 285 / 9e-93 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 230 / 8e-71 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 217 / 3e-65 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.014G123800 [exp] 189 / 7e-55 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 182 / 8e-53 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 137 / 1e-35 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.013G016900 [exp] 115 / 5e-28 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 101 / 4e-23 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10014112 pacid=23156763 polypeptide=Lus10014112 locus=Lus10014112.g ID=Lus10014112.BGIv1.0 annot-version=v1.0 ATGGCATTGTCCACCACAGGCTATGGCCAGATACCCTTCGACGAGGAGATGCAGAAGCCCAGCTACCGGCCGCCGTCCCCGTTCGACGACGGCGGCGGTG ACTCTGCCCAGCTCCTCAGATCGTTCAATAAGACCAAACGCCTAGCTTCCCTCGACGCCTTCCGTGGCCTCTGCGTCTTCCTGATGATGGTGGTTGATTA TGGGGGTTCAGTTTTCCCAATCATTGCTCATTCGCCGTGGAACGGCCTTCACTTGGCGGATTTCGTGATGCCTTTCTTCCTTTTCGTCGTTGGCGTATCC ATTGCGCTTGTCTACAAGAAAGCACCAAACAAAACAGAAGCCACATGGAAGGCTGCGGGTAGAGCGGCTAAGTTATTCTTGTTGGGTGTTCTTCTACAAG GTGGGTTTCTTCACGGGTTAAATTCACTAACCTATGGCGTTGACATGGAAAAGATACGTTTGCTAGGAATTTTGCAGCTGATGATGGTGGTTGATTATGG GGGTTCAGTTTTCCCAATCATTGCTCATTCGCCGTGGAACGGCCTTCACTTGGCGGATTTCGTGATGCCTTTCTTCCTTTTCGTCGTTGGCGTATCCATT GCGCTTGTCTACAAGAAAGCACCAAACAAACCAGAAGCCACATGGAAGGCTGCGGGTAGAGCGGCTAAGTTATTCTTGTTGGGTGTTCTTCTACAAGGTG GGTTTCTTCACGGGTTAAATTCACTAACCTATGGCGTTGACATGGAAAAGATACGTTTGCTAGGAATTTTGCAGGTAAATTGTTCGGTAAGAGGTGACGT TGGCCCTGCTTGTAATTCAGCTGGATTGATTGACCGCTATGTTCTTGGTATCAATCACCTGTATGCAAAGCCTGTTTACAAAAATCTCAAGGAATGTAAA ATGTTGAGTGACAAATCAGTTCCCGAGGATGCTCCTTCATGGTGCCATGCTCCCTTCGATCCGGAAGGCCTTCTCAGCTCGATAACAGCTGCAGTCACGT GCTTAATCGGACTTCAGTATGGCCATGTTCTTGCTCATTTGCAGGATCACAAAGGACGCCTGGAAAACTGGTGTGGTTTCTCAGTCTTTTTGCTTGTGCT CGGGCTGTTCCTCGCCCTTCTTGGTCGATATATATGGCCACAGATGGGTGACATTACCATTGGAATGGATGGGGAAGCATGCCTTGAGCATCTTCATCAT CGTATCTTCCAACTTAGCGGTCATTGCAATTCAAGGTTTCTACTGGAAATCACCTGA
AA sequence Show only first row Show all	>Lus10014112 pacid=23156763 polypeptide=Lus10014112 locus=Lus10014112.g ID=Lus10014112.BGIv1.0 annot-version=v1.0 MALSTTGYGQIPFDEEMQKPSYRPPSPFDDGGGDSAQLLRSFNKTKRLASLDAFRGLCVFLMMVVDYGGSVFPIIAHSPWNGLHLADFVMPFFLFVVGVS IALVYKKAPNKTEATWKAAGRAAKLFLLGVLLQGGFLHGLNSLTYGVDMEKIRLLGILQLMMVVDYGGSVFPIIAHSPWNGLHLADFVMPFFLFVVGVSI ALVYKKAPNKPEATWKAAGRAAKLFLLGVLLQGGFLHGLNSLTYGVDMEKIRLLGILQVNCSVRGDVGPACNSAGLIDRYVLGINHLYAKPVYKNLKECK MLSDKSVPEDAPSWCHAPFDPEGLLSSITAAVTCLIGLQYGHVLAHLQDHKGRLENWCGFSVFLLVLGLFLALLGRYIWPQMGDITIGMDGEACLEHLHH RIFQLSGHCNSRFLLEIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Lus10000090 [exp]	1.0	0.9564
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	1.7	0.8847
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	2.8	0.8954
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	3.5	0.8833
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	4.7	0.8589
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	6.7	0.8828
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	7.7	0.8793
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	9.8	0.8710
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	14.3	0.8567
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	15.0	0.8734

Compare expression of checked genes

Lus10014112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.