Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 768 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 408 / 9e-134 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 390 / 2e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 381 / 4e-123 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G44880 365 / 4e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 366 / 8e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 359 / 4e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 363 / 9e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 359 / 2e-116 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 358 / 8e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019797 [exp] 1226 / 0 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 405 / 3e-132 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 398 / 2e-130 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 399 / 3e-130 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 395 / 1e-128 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 390 / 2e-128 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017243 [exp] 378 / 9e-125 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 370 / 1e-121 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 370 / 1e-121 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125500 [exp] 838 / 0 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 424 / 2e-142 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 419 / 8e-138 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 404 / 4e-134 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G105700 [exp] 403 / 2e-132 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 399 / 8e-131 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G046200 [exp] 394 / 4e-130 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G140400 [exp] 391 / 1e-129 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 396 / 7e-129 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 392 / 2e-128 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014113 pacid=23156836 polypeptide=Lus10014113 locus=Lus10014113.g ID=Lus10014113.BGIv1.0 annot-version=v1.0 ATGTCTAACGGCGCTCAAATGTCGATTCCAATGAGAGCTCCAGCCTGGGTCTCAACCAGAAGACTATTCGAGCAAAAACTCCTTGAGCTTCCCAATTGTA CCAATTTATCCCATGTAAAGCAGGTTCATGCTCAAATAATTAAGCAAAACCTCCACACGGACCTCTACGTAGCTCCCAAGTTGATATCGGCATTCTCCCA CTGTCATCACATGAAGCTGGCTCTCAGGGTCTTTAACCAAGTTCGCCACCCAAACGTGTTCTTGTACAACACCCTCATTCGAGCTCATGTCCACACCTCT CAACCTTCCATGGCATTCGCTGCTCTCTTTGAGATGCAGCAAAATGGCCTCTTTCCTGACAATTTCACTTACCCATTTCTTCTTAAAGCCTGTAGTGCCG GGTCTTGGCTGTCCATGGTCCAAACGATACACGGCAGTTTACACAAGCTTGGATTTTTTAGTGATCCTTTTGTGCCTAATTCCTTGATTGATAGCTACTG CAAGTGTGGTGGATCGGGAATTCTATTTGCTATGAGGCTGTTTAGGAGTATGAATAAGAAAGATATTGTATCTTGGAATACAATGATTGGGGGCCTGGTT AGAACGGGAGATTTGAGAGGTGCCCGCAGGCTGTTCGATGAAATGCCTGTGAGAGATTCCATTAGTTGGAATACCGTTTTAGATGCTTATGTAAAGGCCG GAGAGATGAATGAAGCCTTTGAGTTGTTTCAGATTATGCCAGAGAGGAATGTTGTGTCATGGTCCACGATGGTTTTTGGTTATAGTAAAACAGGGGATAT ACAAATGGCTCGAATGCTGTTTGATAAAATGCCATCTAGGAATTTGGTCCCTTGGACCATAGTTATATCTGTGTATGCCCAAATGGGGCTAGGGCAGGAG GCAGTAAGATTGTATGATTTAATGGAGAAAGACGGACTAGTGCTTGATTCCGGAGCTGCTATCAGCATACTGGCTGCTTGTGCAGAGTCTGGCTTACTGT GTCTGGGGAATAGAGTTCATGCCTCTATTATGAGTACTAGATTGAAATGTCATGTTGAAGTTTGTAATGCCTTGGTTTATATGTATGCAAAATGCGGTAT GGTAAAGAAGGCATATGAAGTATTTCAGCAGATGGCAGAGACAGATTTAGTCTCTTGGAATTGCATGCTTCAAGGGTTAGCCGTAAATGGGCATGGAGAT ATAGCACTTCAGTTCTTTTCTAGGATGAAACAAGAAGGTTTCAAGCCTGATAAGTTTACTTTGGTAGGTGTTCTGTGTGCTTGTACTCATGCTGGCTTAA TCAATAAGGGCCTCGGGTACTTCCACAATATGGAGAGGGAATATGGGATAGCTCCTGAGATTGAGCACTATGGTTGCGTGGTTGATCTGTTGGGCCGTGG TGGACTTCTCAAGGATGCCTTTAGGCTTGTGAAAAGCATGCCAATGGAACCAAATGTTGTTATCTGGGGTACCCTACTAGGTGCCTGCAGAATGCATAAT GAGGTCGATCTGGCTAAGGAGGTTCAAGATCACATGGCTGAATCTGATCGATCGGAGCATGGTAATGGTTGCATGTTGTCAAATATCTTTGCTGCTGCCG GGGACTGGGTGAATGTCGCTAATGTGAGGCTAGAAATGAAAAGTGCTGGAATTCAAAAGCCTTCTGGTGCTAGTTTCATTGAGGTAGATGATGAGGTCCA TGAATTCACCGTATTGGACAAGTCACATCCTGAGTCCGACAAAATTTATGAGACAATTGATGCATTGATTCAGGAACTGACACTAATCGCTGATGCTGCA ATTGACAACCAACTGATGCAATTGATGCATTGA
AA sequence Show only first row Show all	>Lus10014113 pacid=23156836 polypeptide=Lus10014113 locus=Lus10014113.g ID=Lus10014113.BGIv1.0 annot-version=v1.0 MSNGAQMSIPMRAPAWVSTRRLFEQKLLELPNCTNLSHVKQVHAQIIKQNLHTDLYVAPKLISAFSHCHHMKLALRVFNQVRHPNVFLYNTLIRAHVHTS QPSMAFAALFEMQQNGLFPDNFTYPFLLKACSAGSWLSMVQTIHGSLHKLGFFSDPFVPNSLIDSYCKCGGSGILFAMRLFRSMNKKDIVSWNTMIGGLV RTGDLRGARRLFDEMPVRDSISWNTVLDAYVKAGEMNEAFELFQIMPERNVVSWSTMVFGYSKTGDIQMARMLFDKMPSRNLVPWTIVISVYAQMGLGQE AVRLYDLMEKDGLVLDSGAAISILAACAESGLLCLGNRVHASIMSTRLKCHVEVCNALVYMYAKCGMVKKAYEVFQQMAETDLVSWNCMLQGLAVNGHGD IALQFFSRMKQEGFKPDKFTLVGVLCACTHAGLINKGLGYFHNMEREYGIAPEIEHYGCVVDLLGRGGLLKDAFRLVKSMPMEPNVVIWGTLLGACRMHN EVDLAKEVQDHMAESDRSEHGNGCMLSNIFAAAGDWVNVANVRLEMKSAGIQKPSGASFIEVDDEVHEFTVLDKSHPESDKIYETIDALIQELTLIADAA IDNQLMQLMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	0	1
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	1.7	0.9173
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	3.3	0.8967
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	4.0	0.9098
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	5.1	0.8932
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	6.9	0.8909
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	6.9	0.9041
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	7.1	0.9124
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	7.5	0.9151
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	8.7	0.9082
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	9.9	0.8991

Compare expression of checked genes

Lus10014113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.