Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69370 199 / 5e-64 CM-3, CM3 chorismate mutase 3 (.1) AT3G29200 191 / 2e-60 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT5G10870 139 / 5e-41 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019795 [exp] 273 / 3e-94 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10032998 [exp] 271 / 4e-92 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10015378 [exp] 261 / 3e-83 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10007444 [exp] 137 / 6e-40 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088700 [exp] 217 / 1e-70 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 183 / 1e-57 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1) Potri.018G019250 [exp] 139 / 5e-41 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014114 pacid=23156865 polypeptide=Lus10014114 locus=Lus10014114.g ID=Lus10014114.BGIv1.0 annot-version=v1.0 ATGGATGATTTTCACGGTTCTCTTGTTGAGTACATGCCAAGGTCCTTATCGATCGTGGGTAGGTACAGAAGTCCTGATGAGCATCCTTTCTTCCCACATG ATTTACCTGAACCATTGTTGCCACCAATACAGTATCCCAAGGTGCAACATGACATTGCTGATTCAGTGAATATAAATAGTACCATCTGGGGCATGTACTT TAATGATCTTCTTCCAAGACTGGTCAAGGCAGGAGATGGTGGAAACTGTGGATCCTCTGCAGTATACGACACCACCTGCCTCCAGGACAACGAGGGATTG ATGGCCTTGCTGTACCCAGAAGTTGAGAAAAATGTAGTGGAGCGAGTAGAGCTGAAAGCCAGGATTTTCGCGCAGGAAGTGACCATGAAAGAAGGGAAAT TAGCTGAATGCGAGCCAATGTACAAGATAGACCCAAGTTTGGTTGCTCATCTTTATGGGAAATGGATCATGCATCTGACCAAGGAAATTCAAGTTAAGTA CTTGCTGACAAGGCTTGATGGATACTGCTACTCTGGTCTGGCGACATATTGA
AA sequence Show only first row Show all	>Lus10014114 pacid=23156865 polypeptide=Lus10014114 locus=Lus10014114.g ID=Lus10014114.BGIv1.0 annot-version=v1.0 MDDFHGSLVEYMPRSLSIVGRYRSPDEHPFFPHDLPEPLLPPIQYPKVQHDIADSVNINSTIWGMYFNDLLPRLVKAGDGGNCGSSAVYDTTCLQDNEGL MALLYPEVEKNVVERVELKARIFAQEVTMKEGKLAECEPMYKIDPSLVAHLYGKWIMHLTKEIQVKYLLTRLDGYCYSGLATY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69370		CM-3, CM3	chorismate mutase 3 (.1)		Lus10014114 [exp]	0	1

Compare expression of checked genes

Lus10014114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.