Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68010 684 / 0 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G42190 221 / 1e-68 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT1G75950 220 / 2e-68 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT1G20140 202 / 2e-61 ASK4 SKP1-like 4 (.1) AT2G25700 189 / 6e-57 ASK3 SKP1-like 3 (.1) AT4G34210 184 / 6e-55 ASK11 SKP1-like 11 (.1) AT4G34470 180 / 1e-53 ASK12 SKP1-like 12 (.1) AT3G21860 170 / 1e-49 ASK10 SKP1-like 10 (.1) AT3G21850 168 / 5e-49 ASK9 SKP1-like 9 (.1) AT3G60010 166 / 2e-48 ASK13 SKP1-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019793 [exp] 743 / 0 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10019794 [exp] 283 / 2e-92 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017281 [exp] 224 / 6e-70 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10005610 [exp] 224 / 9e-70 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 222 / 3e-69 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10013575 [exp] 221 / 6e-69 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10041874 [exp] 189 / 5e-57 AT4G34210 201 / 3e-67 SKP1-like 11 (.1) Lus10019432 [exp] 169 / 2e-49 AT1G20140 186 / 2e-61 SKP1-like 4 (.1) Lus10002803 [exp] 155 / 6e-44 AT1G20140 189 / 3e-62 SKP1-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175800 [exp] 715 / 0 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.004G175900 [exp] 238 / 2e-75 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.002G018700 [exp] 229 / 7e-72 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 228 / 1e-71 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.005G109900 [exp] 225 / 2e-70 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 212 / 2e-65 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.012G085200 [exp] 128 / 2e-34 AT4G34210 157 / 7e-50 SKP1-like 11 (.1) Potri.010G249600 [exp] 125 / 5e-30 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.008G009500 [exp] 122 / 6e-29 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.014G022800 [exp] 120 / 2e-28 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10014115 pacid=23156818 polypeptide=Lus10014115 locus=Lus10014115.g ID=Lus10014115.BGIv1.0 annot-version=v1.0 ATGCATCTCTTACTTACGACCGTCAGATCAAGATTCAGTCAACAAGTCAACGGAAATCCACCGGTTAAACTTAGTCTCCTCATCCCCGCCAGATTATTTC TCCAAAGAGTGTACCAGAAATTTAAAAAGGAGCCCAGAGACTCTGAAGCGAACTTAGCAAACTTAGTAGCTCCGATGGCGAAACCGGTCTCCATAGAAGT TTGGAATCCAAATGGGAAATACAGAGTCGTCAGCACTAAATCCATGCCCGGTACTCGCTGGATCAATCTCCTCATCGACCAAGATTGCCGTGTTGAGATA TGTACCCAGAAGAAGACTATCTTATCCGTCGAGGATATCATCGCTCTAATCGGCGACAAGTGTGACGGAGTCATCGGCCAGTTGACGGAGGACTGGGGAG AAACTCTGTTCTCTGCTCTGAGCAAAGCTGGAGGCAAAGCTTTCAGCAACATGGCTGTTGGGTATAACAATGTGGACGTTAATGCGGCGAATAAGTACGG AGTTGCAGTTGGAAACACTCCTGGAGTTCTTACGGAGACAACAGCTGAGTTAGCTGCATCGCTATCGTTGGCAGCAGCTAGGAGAATCGTCGAGGCTGAT GAGTTCATGAGAGCTGGGTTATATGATGGATGGCTTCCTCACTTGTACGTTGGGAACTTGCTCAAGGGGCAGACTGTTGGTGTCATCGGAGCTGGTAGAA TTGGATCAGCCTATGCTAGAATGATGGTTGAAGGGTTCAAAATGAATCTGATTTATTTTGATTTGTATCAATCCACGAGGCTAGAGAAGTTTGTTACCGC TTATGGACAGTTCCTCAAAGCAAACGGTGAGCAACCTGTTACCTGGAAGAGAGCATCCTCCATGAGCGAGGTGCTCCAAGAGGCTGATGTGGTTAGTCTT CACCCAGTTTTGGATAAGACCACTTACCATTTGATCAACAAAGAGAGTCTTGCTACTATGAAGAAGGAAGCCATCCTGATAAACTGCAGCAGGGGTCCTG TGGTTGATGAAGTAGCCCTTGTTGAACATTTGAAACAGAACCCGATGTTTCGAGTTGGTCTCGATGTCTTTGAGGATGAGCCTTACATGAAACCAGGACT TGCTGAAATGAAGAATGCTATTGTTGTGCCACACATTGCGTCTGCTTCAAAGTGGACTCGTGAAGGAATGGCAACTCTGGCAGCTCTAAATGTCTTGGGA AAGATCAAAGGGTACCCAGTATGGGGAGATCCGAACAAAGTAGAACCTTTCCTGGATGTGAATGCTCCTCCTCCAGCTGCAAGTCCAAGCATTGTGAACG CCAAAGCCCTCGGTGTAGAGAGCTCTGACGATGGTAGTATAATATTGTCTCATCAGTGGAAGGCAATCTACAACCATGGTTTTGCCGTCTTAGTTGTCGC GAAAATCATCAGCCTACCAGCGACAATGTCGAGCTTGAAGAAGATCGTCCTGAGGTCCTCGGACGGAGAAACGTTCGAGGTCGAGGAAACGGTTGCTACC GAATCGCAGACGATCAAGCACATGATCGAGGACGACTGCGCCGACAACGAGATCCCCATCCCCAACGTCACCAGCCAGATCTTGGCCAAGGTGATCGAGT ACTGCCGCAAGCACGTTGAGTCACCCGCCGGTGACGAGAAGGAGAAGTCGGTTGTCGCGGCCGCTAATGACGACAGTAACAAGGATCTCAAGGCCTGGGA CGCTGAATTCGTCAAAGTCGACCAGAAGACCCTCTTTGACCTAATCTTGGCGGCTAACTATCTCAATATCAAGGGTTTGCTGGATTTGACCTGCCAAACT GTGGCTGACATGATTAAGGGCAAGACTCCTGAGGAGATCCGCAAGACCTTCAACATCAAGAACGACTTCACACCAGAGGAGGAAGAGGAAGTCAGGAGGG AGAACCAGTGGGCATTTGAGTGA
AA sequence Show only first row Show all	>Lus10014115 pacid=23156818 polypeptide=Lus10014115 locus=Lus10014115.g ID=Lus10014115.BGIv1.0 annot-version=v1.0 MHLLLTTVRSRFSQQVNGNPPVKLSLLIPARLFLQRVYQKFKKEPRDSEANLANLVAPMAKPVSIEVWNPNGKYRVVSTKSMPGTRWINLLIDQDCRVEI CTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEAD EFMRAGLYDGWLPHLYVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMSEVLQEADVVSL HPVLDKTTYHLINKESLATMKKEAILINCSRGPVVDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLG KIKGYPVWGDPNKVEPFLDVNAPPPAASPSIVNAKALGVESSDDGSIILSHQWKAIYNHGFAVLVVAKIISLPATMSSLKKIVLRSSDGETFEVEETVAT ESQTIKHMIEDDCADNEIPIPNVTSQILAKVIEYCRKHVESPAGDEKEKSVVAAANDDSNKDLKAWDAEFVKVDQKTLFDLILAANYLNIKGLLDLTCQT VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	0	1
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	3.0	0.9506
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10023128 [exp]	4.2	0.9385
AT3G18870			Mitochondrial transcription te...		Lus10042342 [exp]	4.7	0.9143
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10012459 [exp]	5.1	0.9445
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10005402 [exp]	7.4	0.9367
AT3G47070			unknown protein		Lus10001204 [exp]	8.9	0.9383
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	9.5	0.9342
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	11.4	0.8383
AT2G03420			unknown protein		Lus10036810 [exp]	12.7	0.9213
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003304 [exp]	14.4	0.9182

Compare expression of checked genes

Lus10014115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.