Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16800 375 / 3e-129 high-affinity nickel-transport family protein (.1) AT4G35080 343 / 1e-116 high-affinity nickel-transport family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019792 [exp] 604 / 0 AT2G16800 422 / 2e-147 high-affinity nickel-transport family protein (.1) Lus10027851 [exp] 379 / 1e-130 AT2G16800 386 / 1e-133 high-affinity nickel-transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175700 [exp] 432 / 1e-151 AT2G16800 378 / 2e-130 high-affinity nickel-transport family protein (.1) Potri.009G135600 [exp] 415 / 7e-145 AT2G16800 358 / 3e-122 high-affinity nickel-transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF03824 [flax] [poplar] NicO High-affinity nickel-transport protein
Representative CDS sequence Show only first row Show all	>Lus10014116 pacid=23156851 polypeptide=Lus10014116 locus=Lus10014116.g ID=Lus10014116.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTACTATACTCTTCTCCTTCTTCCACCCCTCCTTTCAGAATTCACAACCACACCTCTCCATCTATGCCAAGTCTTCCCCGATTCGATGCTG CCAAACTTCGCTGTTTGTCAATTCTGCCAAGACTTTCCTGCAAGTTTGAGCTAAATCCACCACTGAAATCATCTCTCTCTTCGAGTAAATTCCCCCTGCA AGTCGATTCCTCATCTGAGTCGGCGGAAACTTCTGATCATGCTGAACAGATCCCAGCTAAACCGTCTCATTTGCCAAGAAAGGCTTTGAATGTTGCAGCA TGTGTGCTACTCTCTGCAACCTTCATGTTCGCAATGCATCCAATTTTTGCATCGCCGGCATTAGCAACCTTCCAAACAGCTGCTAAGACTGGCACTCCGG CAGCTGGTATAGGAACTAAACTAATGAGCACTGAACTGTTGAGCAGTGCTTGGACCGGCTTCTTTGCCGGTTGCCTACACACACTCTCAGGTCCTGATCA CCTTGCAGCATTAGCTCCACTTTCGATAGGCCGGTCAAGGCTCGAAAGTGCTGCAGTTGGAGCTCTGTGGGGGTGCGGTCATGATGCCGGTCAAGTAATC TTCGGCCTGCTCTTTCTCTTGCTCAAGGATCGCCTCCATATCGAGATTCTCAGAACTTGGGGCACTCGAGTCGTAGGTATTACTCTACTTGTCATCGGCG GTATGGGCATCAAAGAAGCTTCCGAAGTTCCGACGCCTTGTGTCGCATTAGAAAACGGGGAGTGTGATGTCAGTGTTTACGAATCGGCTGCACTCGAATC CTCCTCCTCCCCTGCTGCAGGGAAACAGAAGAAGATTGGTTTCGCTACATTTGCGACAGGGATCGTCCACGGTTTGCAACCCGATGCACTCATGATGGTA TTGCCGGCACTCGCCTTGCCTTCACGAGTTGCTGGTGCTGCGTTTCTGGCTATGTTCCTCGTCGGAACCGTCATTGCGATGGGATGCTATACTGTGTTCA TAGGATCTTGCAGCGAGGCATTGAAGGACCGAGTACCCAGAATAACGGAGAAACTGACATGGGCATCTTCTCTTATAGCTATTACTCTCGGTGTCGCCAT TCTCGTCAGCCAATTCTTTGGATTCAGCTTGTATTAG
AA sequence Show only first row Show all	>Lus10014116 pacid=23156851 polypeptide=Lus10014116 locus=Lus10014116.g ID=Lus10014116.BGIv1.0 annot-version=v1.0 MERLLYSSPSSTPPFRIHNHTSPSMPSLPRFDAAKLRCLSILPRLSCKFELNPPLKSSLSSSKFPLQVDSSSESAETSDHAEQIPAKPSHLPRKALNVAA CVLLSATFMFAMHPIFASPALATFQTAAKTGTPAAGIGTKLMSTELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRSRLESAAVGALWGCGHDAGQVI FGLLFLLLKDRLHIEILRTWGTRVVGITLLVIGGMGIKEASEVPTPCVALENGECDVSVYESAALESSSSPAAGKQKKIGFATFATGIVHGLQPDALMMV LPALALPSRVAGAAFLAMFLVGTVIAMGCYTVFIGSCSEALKDRVPRITEKLTWASSLIAITLGVAILVSQFFGFSLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16800			high-affinity nickel-transport...		Lus10014116 [exp]	0	1
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10040987 [exp]	13.1	0.7990
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	21.5	0.7966
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	24.9	0.7871
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	29.6	0.7774
AT2G16800			high-affinity nickel-transport...		Lus10019792 [exp]	30.4	0.7668
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	31.3	0.7795
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	31.7	0.7738
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	32.1	0.7674
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	33.8	0.7046
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	44.0	0.7486

Compare expression of checked genes

Lus10014116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.