Plant FIBer expression Database

Lus10014117 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68000 256 / 1e-87 ATPIS1 phosphatidylinositol synthase 1 (.1)
AT4G38570 239 / 7e-81 PIS2 probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019791
[exp]
329 / 3e-116 AT1G68000 354 / 1e-125 phosphatidylinositol synthase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G175600
[exp]
280 / 5e-97 AT1G68000 358 / 7e-127 phosphatidylinositol synthase 1 (.1)
Potri.009G135500
[exp]
263 / 5e-90 AT1G68000 340 / 6e-120 phosphatidylinositol synthase 1 (.1)
PFAM info
Representative CDS sequence
>Lus10014117 pacid=23156840 polypeptide=Lus10014117 locus=Lus10014117.g ID=Lus10014117.BGIv1.0 annot-version=v1.0
ATGGAAAATATGTACTTTGAGTTCTCTGAAGAGTCATGCCTGACTTATACATTCTTCTTTTCAGTTTCAACGTTTGGAGCTGTTCTGGACATGATAACAG
ACAGGATTAGCACTGCCTGTCTACTTGTCATCCTTTCTCAAGTATATAGGCCTGGCTTGACATTTGTGTCTTTGCTTGCGCTGGATATTGGTAGCCATTG
GCTGCAGATGTACAGTACTTTCTTGTTGGGTAAAGCTAGTCACAAAGACGTGAAAGACAGTACCAGTTGGCTTTTCAGAGCTTACTATGGCAACCGTATG
TTTATGGCATACTGTTGTGTGGCCTGTGAGGTTCTCTATATTTCCTTGTATCTTCTTGCAGGAAACCAAACTTCACATTTATTGGATGTTCTGATGTCCT
TGACAAAAGAGATCTCGCCTTTCTCTGTCTTGGTCGGTTTGAGTTTGTTCGGATGGGCGATCAAACAAGTTGTAAATGTTATACAGATGAAGACAGCAGC
AGATATCTGTGTGCTTCATGACAGCAACAAGAAAGAGAGGCCTTGA
AA sequence
>Lus10014117 pacid=23156840 polypeptide=Lus10014117 locus=Lus10014117.g ID=Lus10014117.BGIv1.0 annot-version=v1.0
MENMYFEFSEESCLTYTFFFSVSTFGAVLDMITDRISTACLLVILSQVYRPGLTFVSLLALDIGSHWLQMYSTFLLGKASHKDVKDSTSWLFRAYYGNRM
FMAYCCVACEVLYISLYLLAGNQTSHLLDVLMSLTKEISPFSVLVGLSLFGWAIKQVVNVIQMKTAADICVLHDSNKKERP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68000 ATPIS1 phosphatidylinositol synthase ... Lus10014117
[exp]
0 1
AT4G33000 SCABP8, ATCBL10... SOS3-LIKE CALCIUM BINDING PROT... Lus10015630
[exp]
1.7 0.9512
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10021515
[exp]
3.5 0.9383
AT4G10170 SNARE-like superfamily protein... Lus10002944
[exp]
4.5 0.9309
AT4G27130 Translation initiation factor ... Lus10027181
[exp]
4.9 0.9404
AT4G27130 Translation initiation factor ... Lus10015124
[exp]
7.0 0.9278
AT3G12300 unknown protein Lus10005383
[exp]
8.5 0.9291
AT3G16990 Haem oxygenase-like, multi-hel... Lus10016885
[exp]
9.2 0.9226
AT2G26070 RTE1 REVERSION-TO-ETHYLENE SENSITIV... Lus10030001
[exp]
12.0 0.9272
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Lus10022994
[exp]
12.0 0.9113
AT1G28540 unknown protein Lus10025433
[exp]
14.0 0.9032

Lus10014117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.