Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38580 254 / 4e-88 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT4G35060 216 / 4e-73 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 201 / 4e-67 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 160 / 3e-51 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 157 / 5e-50 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 141 / 1e-43 Heavy metal transport/detoxification superfamily protein (.1) AT4G39700 139 / 6e-43 Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 136 / 1e-41 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT1G06330 89 / 4e-23 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 81 / 1e-19 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019789 [exp] 313 / 1e-111 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10028426 [exp] 213 / 9e-72 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10041879 [exp] 213 / 9e-72 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10016436 [exp] 174 / 1e-56 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 173 / 4e-56 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 160 / 5e-51 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10036004 [exp] 159 / 7e-51 AT1G22990 187 / 4e-62 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Lus10016708 [exp] 159 / 8e-51 AT1G71050 192 / 1e-63 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 157 / 1e-49 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175400 [exp] 261 / 3e-91 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.009G135300 [exp] 251 / 5e-87 AT4G38580 234 / 3e-80 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.005G110400 [exp] 181 / 2e-59 AT5G66110 189 / 2e-62 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) Potri.009G135201 [exp] 169 / 3e-55 AT4G38580 167 / 8e-55 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.007G087300 [exp] 166 / 2e-53 AT4G39700 215 / 9e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 164 / 9e-53 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.005G079800 [exp] 158 / 2e-50 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 152 / 3e-48 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.017G123400 [exp] 150 / 4e-47 AT5G17450 220 / 4e-75 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G092200 [exp] 148 / 2e-46 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10014120 pacid=23156779 polypeptide=Lus10014120 locus=Lus10014120.g ID=Lus10014120.BGIv1.0 annot-version=v1.0 ATGGGCGTAGTGGATAATTTCTCCCACCTCTTCGACTGCTCAAGCCGAAGCTCTCACAAAAGACGCAAGCAACTCCAGACGGTGGAGATCAAAGTGAGGA TAGACTGCGAGGGGTGCGAGCGGAAGGTGAAGAGGGCGGTGGAAGGGATGAAAGGCGTCAGCAAAGTCGACGTCGAACGTAAGGCCAACAAGGTCACCGT CACGGGCTACGTTGACCCGTCAAAGGTGATCGCACGCGTGGCTCACCGGACGGGGAAGAGAGCTGAGCCGTGGCCTTACGTGCCATACGACGTCGTGGCG CACCCTTACGCTGCTGGGGTTTACGACAAGAAGGCTCCTTCGGGTTACGTGCGGAGGGCGGATGACCCGGGTGTTTATCAGCTCGCACGTGCCAGCTCCA CGGAGGTGAGGTACACCACCGCGTTTAGCGACGATAACCCGGCTGCCTGTTCCATCATGTGA
AA sequence Show only first row Show all	>Lus10014120 pacid=23156779 polypeptide=Lus10014120 locus=Lus10014120.g ID=Lus10014120.BGIv1.0 annot-version=v1.0 MGVVDNFSHLFDCSSRSSHKRRKQLQTVEIKVRIDCEGCERKVKRAVEGMKGVSKVDVERKANKVTVTGYVDPSKVIARVAHRTGKRAEPWPYVPYDVVA HPYAAGVYDKKAPSGYVRRADDPGVYQLARASSTEVRYTTAFSDDNPAACSIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	0	1
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	5.8	0.9116
AT2G47485			unknown protein		Lus10036328 [exp]	7.1	0.8833
					Lus10020564 [exp]	12.8	0.9123
AT5G27930			Protein phosphatase 2C family ...		Lus10031475 [exp]	13.6	0.8929
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	13.6	0.9038
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	21.4	0.8735
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	23.0	0.9101
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	24.2	0.8817
					Lus10022042 [exp]	26.1	0.8524
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10035178 [exp]	27.4	0.8126

Compare expression of checked genes

Lus10014120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.