Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 263 / 5e-89 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 253 / 5e-85 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 145 / 3e-43 bZIP ATBZIP24 basic leucine zipper 24 (.1.2) AT1G68640 40 / 0.001 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019788 [exp] 316 / 1e-110 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027847 [exp] 302 / 7e-104 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 303 / 1e-103 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 133 / 2e-39 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019756 [exp] 63 / 1e-12 AT4G35040 79 / 4e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175200 [exp] 273 / 8e-93 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G134900 [exp] 268 / 5e-91 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.003G204400 [exp] 134 / 1e-38 AT2G16770 151 / 5e-45 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G020200 [exp] 119 / 2e-32 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10014121 pacid=23156751 polypeptide=Lus10014121 locus=Lus10014121.g ID=Lus10014121.BGIv1.0 annot-version=v1.0 ATGGACGACGGAGAGGTTGATTTCTCTCACCAAGGAGTGTTCCCGGAGATTCCGAGCAGCGGATCAATGGACACCTTCTTCGACGATCTGCTGAAAGACA CTCACGCATGTACACACACCCACACCTGCAATCCGCCGGGTCCGGACTACTCCCACACCCACACTTGCTTCCACGTCCACACCAAAATCGTATCCGCACC TTCCGATGACAAGCTTTGCAGAAATGACACCGCGGAATCAGTGGACAAAAATTCGAAAAAGAAGAAGAAGCAGCGGCCAGTAGGGAACAGGGAGGCGGTG AGGAAGTATAGGGAGAAAAAGAAGGCGAGGACTGCTTCTTTGGAGGATGAAGTTGTGAGGCTGAGAGCCTTGAACCAGCAGCTGATGAAAAGGGTTCAAG GACAGGCTGCATTGGAGGCTGAGATTGCGAGACTAAAGTGTTTGCTTGTCGATATTCGAGGGAGGATCGAAGGGGAGATTGGTTCGTTTCTGTATCAGAA ACCTGCTCCTGCTGCTAATGTGAATTGGAGTAGCTCTAGTGGGCTTGGTGGTGGTGCTTATGTTGTGCACCCGTGTGATATGCAGAGTAGTGATCAGGTT TATACTGGTTGTGACTTTGAGAATCTTCAATGTATGATGAATCAGCATTCCGGAACTAAGGATTTTCCTGTTTCCTGTCTGTGA
AA sequence Show only first row Show all	>Lus10014121 pacid=23156751 polypeptide=Lus10014121 locus=Lus10014121.g ID=Lus10014121.BGIv1.0 annot-version=v1.0 MDDGEVDFSHQGVFPEIPSSGSMDTFFDDLLKDTHACTHTHTCNPPGPDYSHTHTCFHVHTKIVSAPSDDKLCRNDTAESVDKNSKKKKKQRPVGNREAV RKYREKKKARTASLEDEVVRLRALNQQLMKRVQGQAALEAEIARLKCLLVDIRGRIEGEIGSFLYQKPAPAANVNWSSSSGLGGGAYVVHPCDMQSSDQV YTGCDFENLQCMMNQHSGTKDFPVSCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10014121 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	10.1	0.7495
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	11.1	0.7350
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	15.3	0.7268
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	16.4	0.7352
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	32.0	0.7076
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	32.8	0.7290
					Lus10012006 [exp]	32.9	0.6910
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	33.3	0.6934
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	33.9	0.6852
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	34.4	0.7156

Compare expression of checked genes

Lus10014121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.