Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16750 488 / 1e-165 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 428 / 1e-144 Protein kinase superfamily protein (.1.2.3) AT5G63940 380 / 2e-122 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 366 / 3e-116 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 332 / 1e-103 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G18910 233 / 1e-68 Protein kinase superfamily protein (.1) AT3G05140 230 / 4e-68 RBK2 ROP binding protein kinases 2 (.1) AT5G56790 234 / 1e-67 Protein kinase superfamily protein (.1) AT5G10520 227 / 4e-67 RBK1 ROP binding protein kinases 1 (.1) AT5G65530 226 / 5e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019787 [exp] 1181 / 0 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 471 / 3e-157 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 407 / 8e-133 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 386 / 2e-125 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 368 / 2e-117 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 309 / 9e-98 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 305 / 5e-95 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10025103 [exp] 244 / 5e-73 AT2G16750 238 / 7e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10029151 [exp] 234 / 8e-70 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175100 [exp] 736 / 0 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 688 / 0 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 438 / 8e-145 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 427 / 1e-140 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 379 / 2e-121 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 373 / 1e-118 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.002G077900 [exp] 348 / 8e-110 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G173700 [exp] 267 / 1e-80 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 265 / 7e-80 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.009G140300 [exp] 245 / 8e-73 AT4G35030 245 / 9e-75 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014122 pacid=23156856 polypeptide=Lus10014122 locus=Lus10014122.g ID=Lus10014122.BGIv1.0 annot-version=v1.0 ATGACGATTGAGGAGGTAACCCAGAAGAGAAATGTGTTGGTTGGGATTAAATTCGACAGTTGCAGCAGAGAACTCATGGGTTGGGTTGTGTTCAAGGTTG CTGAGCCTGGAGATTCTGTTGTTGCTGTTCATGTCCGCCGAAATTCTGGAAGTGCTCCAAGAGGGAAGCTATTGTTGGATAGTCACATACAAACTTATGA GAGTATATGCTCATTCAAGAAGGTGGATCTCACAGGCCAAATCTGTACAGGGAATTCGGTTAAGAGAAGCTTAGTAAGAGAAGCCAAGAACCATTCTTCT GCTGTTCTAATTCTGGGGATCAGTAATCCAAATGCTCTCTGGGGATGGAATTCCATGGCTAGATATTGCAGCAAGCGGCTTCCACCAACTACTGATGTTC TGGCCATCCACAACGGCAGAATATTCTTCAGAAGGTTCAACAGTTCTCAACTACTAGAGGGAAGAATAAGACATGGAGACCTGAAACCGAGTCTGAGCCT GACGTCAAGTCCTATATCCCCTTCCGAATTTGGTGATTCGGAGTTGGACAGCGTAAGATCAAGCTTCGAAGTGCTGGCAGAAAGCGGAAGTGGGGATTCA AAGGATGAGATTATAAAGAGAGGAAGGAGATCCAATTCGTGTTTAGCTCTAGATCAGAAGCCTGGCTGGCCTCTTCTTAGGAGAGCAACTTCTGCTGATG CTGGCTATACAAGGGAGTTATCTGTAGTACAGTGGGCACTCAGCTTACCAAACCGCGTCGAAAACCGACTGGAAAGCTTATCAGAAGAGCTGAAAGGTGA GGCAATGGGTGCAATAGGGAAAAGATTGGAGATTTTGCTGCAGGGATTAAATTCATCTAGCTGCTGCAAATGGTTTAGCTATGAGCTTTTGGAGACTGCA ACTTGCAAATTTAATTCAGAAAATTTGATTGGGAAAGGAGGATGGAATCAGGTGTACAAGGGGACTCTCCTAGATGGAAATCTGGTAGCAGTGAAGATTC GAAAGTCATCATCGCCAGAAGCAAGAGAGGATTTCGTTCAGGAACTGGAGATCATCTCCTCACTGGAACACAACAACATCACACCTCTAGTAGGGATATG CATCAGAGACTTTGATCTCATATCTGCTTATCACTTCTTACCAAAGGGAAGCCTAGAAGAAAACCTGCACGGAAAGAACAAAGAGAAATCTCCATTGCCA TGGGATGTGAGATTCAGAATCGCTGTTAAAATTGCTGAAGCATTGAACTACCTTCACCATGAAGCTTCTAGGCCTGTAATCCACAGGGATGTCAAGTCTG CAAACATTCTCCTTACAGATGGATTGGACCCACAGCTGTCTGATTTTGGGCTGGCAATCTGGGGACCTACGGCTTCATCTTTCGTTACTCAACCAGATGT AGTGGGAACCTTTGGATATCTTGCACCGGAATACTTCATGTATGGGAAAGTCAGTGACAATATCGATGTGTATTCTTTTGGTGTAGTTCTGCTCGAACTG ATAACAGGCAGAGAAGCAATTATCAGTTCAGAGAATTCCAAGGCTCAGCTGAGCTTGGTCATGTGGGCAAATCAGATACTAGAGTGTGGGAATTCAAAAG ACCTCCTGGATCCAAGTCTGAATGGGGAGTTCGATGAGGTCCAATTTCGAAGGATGGTCATTGCTGCAAAGCTATGCACGACTCGTGCAGCCAGCATACG TCCTAAAATGAGCGAGGTACTAAGGTTACTTGGAGAGGAAGCATACTTCGTGAAATGTGTGATTCCACAACACAAAGACCAAGCAGATGCTGAGAATGAG GAAGATAGTTATGACGATGAAGTGTACCCGGAGTCTACTCCACACCTTCATCTCAATCTAGCATTCCTTGACGTTGATGATACCGACTCTACGTCCCATT CAGACCAAGGAAGCTGTCTCACTTGGGAGGATTACTTACAGGGAAGGTGGAGCAGGTCATCAAGCTTCAATCAGTAG
AA sequence Show only first row Show all	>Lus10014122 pacid=23156856 polypeptide=Lus10014122 locus=Lus10014122.g ID=Lus10014122.BGIv1.0 annot-version=v1.0 MTIEEVTQKRNVLVGIKFDSCSRELMGWVVFKVAEPGDSVVAVHVRRNSGSAPRGKLLLDSHIQTYESICSFKKVDLTGQICTGNSVKRSLVREAKNHSS AVLILGISNPNALWGWNSMARYCSKRLPPTTDVLAIHNGRIFFRRFNSSQLLEGRIRHGDLKPSLSLTSSPISPSEFGDSELDSVRSSFEVLAESGSGDS KDEIIKRGRRSNSCLALDQKPGWPLLRRATSADAGYTRELSVVQWALSLPNRVENRLESLSEELKGEAMGAIGKRLEILLQGLNSSSCCKWFSYELLETA TCKFNSENLIGKGGWNQVYKGTLLDGNLVAVKIRKSSSPEAREDFVQELEIISSLEHNNITPLVGICIRDFDLISAYHFLPKGSLEENLHGKNKEKSPLP WDVRFRIAVKIAEALNYLHHEASRPVIHRDVKSANILLTDGLDPQLSDFGLAIWGPTASSFVTQPDVVGTFGYLAPEYFMYGKVSDNIDVYSFGVVLLEL ITGREAIISSENSKAQLSLVMWANQILECGNSKDLLDPSLNGEFDEVQFRRMVIAAKLCTTRAASIRPKMSEVLRLLGEEAYFVKCVIPQHKDQADAENE EDSYDDEVYPESTPHLHLNLAFLDVDDTDSTSHSDQGSCLTWEDYLQGRWSRSSSFNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	0	1
AT2G37530			unknown protein		Lus10024416 [exp]	2.0	0.9546
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	2.4	0.9689
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	7.1	0.9407
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	10.4	0.9524
AT1G52155			unknown protein		Lus10038269 [exp]	10.7	0.9319
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	11.0	0.9519
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	11.3	0.9426
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	12.2	0.9454
AT5G19970			unknown protein		Lus10019451 [exp]	13.7	0.9300
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	14.0	0.9142

Compare expression of checked genes

Lus10014122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.