Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20980 369 / 4e-126 MCM10 minichromosome maintenance 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019785 [exp] 711 / 0 AT2G20980 382 / 4e-131 minichromosome maintenance 10 (.1) Lus10005072 [exp] 316 / 2e-104 AT4G27960 291 / 3e-98 ubiquitin conjugating enzyme 9 (.1.2) Lus10027845 [exp] 92 / 6e-22 AT2G20980 61 / 2e-11 minichromosome maintenance 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134500 [exp] 464 / 7e-163 AT2G20980 457 / 2e-160 minichromosome maintenance 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09329 [flax] [poplar] zf-primase Primase zinc finger
Representative CDS sequence Show only first row Show all	>Lus10014124 pacid=23156791 polypeptide=Lus10014124 locus=Lus10014124.g ID=Lus10014124.BGIv1.0 annot-version=v1.0 ATGTCAACTCACCAAGACGATCTCGACCTGCTTCTCTCTCTCGAGGACCGAGTTAACGAAACTCCTCCAGGTTCCCCGTCCTTTGATTACCCAGGGTTTC TATCGGATGACGATGGGTCTCCCAGACGAAGAGGAAAGGCGGCTGATTTATCCGTGTTTAAGGACGCGGTTCGAGATTGCCTCGATTACGACGCAACCAA GCTAGTTGAAAAGTCCAGGAAGTCAAATCAGCTGTCGAAGAAATCGAGTGAAGTGAGTGTGGAGAAGCACTCCGGTTTAAGAATCAGTAATCAACCATGC ACACCCGCGGAGCTCGCTGAACGCTTCTCAGGCATTCGTTTCGTTCGGTTGCCTACTATCAAGAGTTCATTGGTGGGGGGCAGTATTTCGGGTTCTTGGG CGACTGTTGGAGTATTGACTGAGAAGGGGAATCCTAGGACTAGCTCTGTTGGCAAAAGCTATTCCATATGGAAATTGAGTTGTTTAGATGAAAACACTGT TTCGGTGTTCTTGTTTGGTGATGCTTACAAGCTGAACAGTGGGGAGAAGGCTGGAACCGTGTTCGGGTTGTTTAATTGTGCTATACGGAAAGATAATATG GGATCAGGTTTTTCTTTGAGTGTTTTCTCTCCGAATCAGATATTGAAGATGGGTACATCAGTCGATTATGGAGTTTGCAAGGGCAAGAGGAGGGATGGAA TTGCTTGTAGCCTAATTGTTAATAAGCGTAAAGGGATCTACTGCAAACACCATAATGTCAATTCAGCTTCCACAATGCGTACCAAGCTGAAGGGAGGGAG CTTCAGCACAGCCTTTAGGTCTCCGATCAACCGGCAAGGTATTCACATGGTTGATCCTCTAGCTGACAAGAAAAACCTACAAAAGCAACAGCCAATCAAG TTACTGTCTGGAGAAGGGCTCAGAAAGGCATTGAGTAATGGAGAAAAAGTGACTACTAATACACACTCGCAAGGAATGAGATTTCTGAACGAGGTCGCAG GAAAGTTGTACCCTAAGAATTCAAGTACAGTAAGCCAACACATCACTAGCTTGGACAAAAGGAAACTACAAAGCATGAAAGTGAATCATCCACCTGGAGA TCCGACAACAGCGATGCAGGATGTTCCAAAACGGATGAAAACTAGTCAGGGAACTGAGAAGATGATTGAGTTGGATCTCATTGACTCGGATGAAGAATCA TGA
AA sequence Show only first row Show all	>Lus10014124 pacid=23156791 polypeptide=Lus10014124 locus=Lus10014124.g ID=Lus10014124.BGIv1.0 annot-version=v1.0 MSTHQDDLDLLLSLEDRVNETPPGSPSFDYPGFLSDDDGSPRRRGKAADLSVFKDAVRDCLDYDATKLVEKSRKSNQLSKKSSEVSVEKHSGLRISNQPC TPAELAERFSGIRFVRLPTIKSSLVGGSISGSWATVGVLTEKGNPRTSSVGKSYSIWKLSCLDENTVSVFLFGDAYKLNSGEKAGTVFGLFNCAIRKDNM GSGFSLSVFSPNQILKMGTSVDYGVCKGKRRDGIACSLIVNKRKGIYCKHHNVNSASTMRTKLKGGSFSTAFRSPINRQGIHMVDPLADKKNLQKQQPIK LLSGEGLRKALSNGEKVTTNTHSQGMRFLNEVAGKLYPKNSSTVSQHITSLDKRKLQSMKVNHPPGDPTTAMQDVPKRMKTSQGTEKMIELDLIDSDEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	0	1
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	7.3	0.7548
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	7.5	0.8494
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	9.3	0.8146
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	11.1	0.8146
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	13.3	0.8093
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	13.4	0.7947
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10001317 [exp]	16.1	0.7627
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	19.7	0.7745
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	19.9	0.8127
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	20.1	0.8170

Compare expression of checked genes

Lus10014124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.