Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35010 896 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 877 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G38590 868 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 647 / 0 BGAL16 beta-galactosidase 16 (.1) AT3G13750 583 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G63800 567 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT4G36360 535 / 2e-179 BGAL3 beta-galactosidase 3 (.1.2) AT2G32810 529 / 9e-177 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT2G28470 524 / 5e-175 BGAL8 beta-galactosidase 8 (.1.2) AT4G26140 508 / 1e-170 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019784 [exp] 1414 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 1212 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 1204 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 893 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027843 [exp] 841 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005070 [exp] 623 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10025980 [exp] 613 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 612 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028538 [exp] 599 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174800 [exp] 1113 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 1113 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.013G105100 [exp] 633 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 627 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.006G144500 [exp] 591 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G180600 [exp] 581 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.005G232600 [exp] 581 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 572 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 572 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 562 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10014125 pacid=23156772 polypeptide=Lus10014125 locus=Lus10014125.g ID=Lus10014125.BGIv1.0 annot-version=v1.0 ATGGCTTCATCCGCCATAGCTCACAAAGAGAAAAAGCTCCACAAGGGACAAGCCGTGACGTATGATGCTAAATCCTTGATCATTAACGGTAAAAGAGAAC TTCTTTTCTCCGGATCCATTCACTATCCTCGCAGCACTCCTGATATGTGGCCAAAGCTGCTTGAAGATGCTAAGAGGGGAGGCATTAATGTGATCCAAAC TTACACATTTTGGAACATCCATGAGCCAGAGGAAGGCAAGCAACACATGGAGAGATTCGTTAGAATGATGGTCGAAAAGCTAAGGGATGCGAACTTGTTT GCAGAACAAGGCGGCCCCATCATCCTAGCTCAGATTGAGAACGAGTACAACACTGTCCAATTAGCTTACCGAGAGTTGGGGAACAAATATGTTCAATGGG CTGGAAACCTTGCTTTGGGATTCAACGTTGGTGTCCCATGGGTTATGTGCAAGCAACACGACGCTCCTGGTCCGGTGATAAATGCTTGCAATGGGAGGCA TTGTGGAGACACGTTTGGTGGGCCTAATGCGCCCAACAAGCCTGCATTATGGACTGAGAACTGGACTGCTCAGTTTAGAGTGTTTGGTGATCCACCATCT CAACGATCAGTAGAAGACACTGCATTCGCCGTGGTTCGTTGGTTCTCCAAAAATGGAAGTCTAGTCAATTATTATATGTACCATGGTGGATCTAATTTTG CTAGGACAGCTGCATCTTTCGTAACGACTCGATACTACGACGAAGCTCCCCTTGATGAATTTGGTCTCGAGAGAGGGCCAAAATTCGGCCACCTCAAGGA TGTACACAAGGCTATTAACCTATGCAAGAGGGCTTTGCTTTGGGGAAGTCCTAGTTCTCAACGACTGAATCCAGATGTCGAGGTTCGAATATACGAGCAA CCCGGGACAGACGTATGTGCGGCATTCTTGACCAACAACCACACCAGGCTTGGTCATACCGCTAACTTCAAGGGCCAGAAATACTACCTTCCTCCACGCT CCATCAGCGTCCTTCCTGATTGCAAAACAGTGGTCTTGAACACTGCAACAATCGTGGCGCAACATAATTCAAGGAACTTCTTGAAATCACAAGTGGCAAA CAAGCTTGAGTGGAAGATGATCACAGAGACCATTCCATCTGATCTCAACGTGACATCCGCAACTCCAATGGAGCTATATTTCTTGACCAAGGACAAGACT GACTACGCGTGGTACACAACGACCATCAACTTGGATCCGAGAGACTTGTCGATGAGACACGACATCCTCCCTGTTCTAAGGGTTGCAAGTCTTGGTCATG CCATGCTTGCTTTTAACAATGGACAGTTCATAGGGTCTGCACACGGAAGCCAGATAGATAAGAGCTTTGTTCTCCAGAAGTCTATTGAATTGAAGCCCGG AATCAACAAGATTTCCTTATTGGGTACCTTGGTTGGACTTCCTGACAGTGGAGCGTACATGGAGCACAGATTTGCAGGACCACGAGGTGTGTCGATCCTG GGGATGAACACAGGAACACTTGATCTGTCACAGAATGGTTGGGGTCACCAGGCTGGACTGAAGGGTGAGCATGATGAACTGTTTACTAAAGAAGGAGCAA AGAAAGCCAAATGGACTAATATTCCTAAAGGTGGCAAAGGACCTCCCCTCACCTGGTACAAGGCTAAGTTTGATGCACCAGAAGGAAATGACCCAGTTGC AGTGAGCATGTATGGGATGATAAAGGGTATGATTTGGGTCAATGGAGAGTCGATTGGGCGTTACTGGATGTCTTATGTATCCCCACTTGGTCAATCCACC CAAGCCGAGTACCACATCCCGAGATCGTACTTGAAGCAGAAGGACAACCTGATCGTGGTGTTGGAGGAAGAGTCGGCGCACCCGAGGAACATTACGATCA TGACGGTGAACAGGGACACCATTTGTAGCGATGTCTCCGAGCTGAGCCCGCCGAGCGTGAGACAGTGGGAGAGGAAAGACGATAAGTTCAGGCCAGTTGG AACGGAGGCCAAGCTAGCTGCTCACCTGAGATGCCCCCATGGAAAGAAAATCTCCGTCGTGGATTTCGCCAGCTACGGTGATCCTTACGGCGCTTGCGGT GGATTCGCTCAGGGGAGGTGCCATTCCCCTGTCTCTAAGCAAGTCGTTGAACAACAATGTTTGGGGAAGGATTCATGCGATGTGCCGTTGGAGAAGGGGC TTTTCAACAAGAACGGCGACCTTTGCCCTGAAGTGAAGAAGACATTGTCGGTTCAGGTGACTTGCAGGTAG
AA sequence Show only first row Show all	>Lus10014125 pacid=23156772 polypeptide=Lus10014125 locus=Lus10014125.g ID=Lus10014125.BGIv1.0 annot-version=v1.0 MASSAIAHKEKKLHKGQAVTYDAKSLIINGKRELLFSGSIHYPRSTPDMWPKLLEDAKRGGINVIQTYTFWNIHEPEEGKQHMERFVRMMVEKLRDANLF AEQGGPIILAQIENEYNTVQLAYRELGNKYVQWAGNLALGFNVGVPWVMCKQHDAPGPVINACNGRHCGDTFGGPNAPNKPALWTENWTAQFRVFGDPPS QRSVEDTAFAVVRWFSKNGSLVNYYMYHGGSNFARTAASFVTTRYYDEAPLDEFGLERGPKFGHLKDVHKAINLCKRALLWGSPSSQRLNPDVEVRIYEQ PGTDVCAAFLTNNHTRLGHTANFKGQKYYLPPRSISVLPDCKTVVLNTATIVAQHNSRNFLKSQVANKLEWKMITETIPSDLNVTSATPMELYFLTKDKT DYAWYTTTINLDPRDLSMRHDILPVLRVASLGHAMLAFNNGQFIGSAHGSQIDKSFVLQKSIELKPGINKISLLGTLVGLPDSGAYMEHRFAGPRGVSIL GMNTGTLDLSQNGWGHQAGLKGEHDELFTKEGAKKAKWTNIPKGGKGPPLTWYKAKFDAPEGNDPVAVSMYGMIKGMIWVNGESIGRYWMSYVSPLGQST QAEYHIPRSYLKQKDNLIVVLEEESAHPRNITIMTVNRDTICSDVSELSPPSVRQWERKDDKFRPVGTEAKLAAHLRCPHGKKISVVDFASYGDPYGACG GFAQGRCHSPVSKQVVEQQCLGKDSCDVPLEKGLFNKNGDLCPEVKKTLSVQVTCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	1.0	0.7962
					Lus10026090 [exp]	6.0	0.7190
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	10.2	0.6856
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	16.2	0.7793
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10020323 [exp]	17.9	0.6522
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	18.4	0.7281
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	20.0	0.7066
					Lus10012012 [exp]	22.0	0.6908
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	24.7	0.5943
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	27.6	0.6748

Compare expression of checked genes

Lus10014125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.