Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16730 993 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 977 / 0 BGAL11 beta-galactosidase 11 (.1) AT4G38590 946 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT1G77410 795 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 722 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT2G28470 720 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 714 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 708 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 658 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 616 / 0 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027843 [exp] 1283 / 0 AT2G16730 949 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 1054 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005070 [exp] 1051 / 0 AT4G38590 781 / 0.0 beta-galactosidase 14 (.1.2) Lus10005071 [exp] 1045 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10027844 [exp] 1044 / 0 AT2G16730 1041 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014125 [exp] 895 / 0 AT4G38590 897 / 0.0 beta-galactosidase 14 (.1.2) Lus10028538 [exp] 766 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 754 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 746 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174800 [exp] 1150 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 1140 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G180600 [exp] 804 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 801 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 764 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G232600 [exp] 712 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 707 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 707 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 705 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G069200 [exp] 701 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Representative CDS sequence Show only first row Show all	>Lus10014126 pacid=23156782 polypeptide=Lus10014126 locus=Lus10014126.g ID=Lus10014126.BGIv1.0 annot-version=v1.0 ATGGCGAGCATCGTCGGAGCCATGATCACAACCTTGCTAGTGGTGGTGCTCTTTTCTTCTTCCGCCGCTGCCACGGAGGAGGAGAAGGGCGTTCGTTACG ACGGAAGGTCGTTGATCATCAATGGGAAAAGGCGACTTCTTTTCTCCGGCTCGATTCATTATCCTCGTAGTACTCCTGACATGTGGCCGGATTTGTTGGG GAAGGCGAAGCGCGGTGGGCTGAATGTGATCCAGACTTACGTCTTTTGGAATGTTCACGAGCCGATTCAAGGCCAGTATAATTTCCAAGGGAGAAATGAT ATAGTGAAATTCATAAGGACGATTGGGGAAATGGGAATGTATGCTACTATTCGAGTTGGACCATTCATTGAAGCAGAATGGAATCATGGTGGGTTTCCCT TCTGGTTAAGAGAGGTTAAGAACATTACATTCCGTACAGACAATCCTCCTTTCAAGTATCATATGAGGAAATTTGTGGAGATGATTGTGGAAAAGCTCAA GGGAGAGAGGTTGTTTGCATCACAAGGAGGTCCTATAATCATGTCACAGGTTGAGAATGAATATGGCAATGTCGAGGGAGTGTTCAAAGATTCAGGATCG CGGTATGTTCAATGGGCAGGGACGATGGTCCAGAGGCTCGAAACGGGAGTCCCGTGGACTATGTGCAAGCAGATTGATGCTCCTGACCCTTTGATTAATA CTTGCAATGGAAGGCACTGTGGAAATACATTTTTCGGACCTAATAGACCAAACAAGCCTTCTCTGTGGACTGAGAATTGGACTTCACATTATACAGTATT TGGAGATCCTCAACATTACAGAAGATCGGAAGAGCTAGCATTCTCGGTAGCTCGATGGTTCGCCGGGAATGGGACTCATGTTAACTATTACATGTACTAT GGAGGGACGAACTTCGGAAGAACAACCTCTCCCTTCTCAACAACTCAATATTATGACGAAGCCCCTGTAGACGAATATGGGCTGGAGAGGGAGCCTAAAT GGGGGCACTTGAAGGACCTGCACCGCGCGCTGAAACTAAGCCAAAAGGCGCTTCTTTGGGGGAACCCTTCTGTTTGGATGCTAAGTGAGGATGTAGAGGT TTGTGTGTACGATTTTCCGAGGAAAAATGTATGTGCTGCTTTCTTGACCAACAACAACACTAAACTTGGAGCAACTGTTGAGTTCAGGGGAAAGGAATAC TATCTGCCTTCATCCTCTGTTAGCATTCTGCCAGATTGCAAGACTGTGGTTTATAACACCAACACGGTTGTGTCCCAACATAATGCAAGGAATTTTGTGA GATCAAGACTTGCTAATTTGAAGCTGAAATGGGAGATGTACAGAGAAGTGATTCCAACTCAGCTTGGTCACACTTCTTTGCAGCCACATGAGCTCTACAA CTTGACTAAGGATACAACTGACTATGCTTGGTACACAACCAAAATACATGTTGAAGAGGAAGATTTGGCTATGGAAAGGAGCTCACTTGAGCTACATGTG GCTAGTCTAGGGCATGCGATGGTTGCTTTTGTTAATGGTGAATTTGTTGGAGCTGCTCATGGAAGTCATGTTGAGAAGAGTTTTGTACTGAAAGCACCAA TCAATCTGAAACCTGCAGAGACCAATAGCATTACATTGTTGGGCAGCATTATGGGGCTCCCAGACAGTGGGGCTTATATGGAGAGGAGATATGCAGGGCC TCGCGGGGTTTCGATCATAGGGATGAAATCTGGTCGGCTTGATCTGAGTTCCAATGGATGGGGACACCAGGTTGGATTGGATGCAGAGAAAGCTGAAGTC TATACCGAGGACGGTTCGCGTAGGGTGAAATGGATACCAATTCAGAAGCAACGCAGGTCTCTAACATGGTACAAGACTTACTTCTATGCTCCTGAGGGAA GAAACCCAGTTGCTGTTCGGATGACTGGAATGGGAAAAGGAATGGTTTGGATCAATGGAAACAGCATAGGGAGATATTGGATGTCTTACCTTTCACCCCT TGGACAACCTACCCAATCCGAGTACCATATCCCCCGGTCGTTCCTGAAACGGAGATGGAACCTAATGGTTATATTGGAGGAAGAGGAAGGAGCAAACCTA GAAAAGATCGAGATCCTGACAGTTGATAGAAACACCATATGTAGCGATATAGCAGAGGACCACATTCCCACAGTGAAGTCATGGGGAAGGCAGCAGGGAC AGATCTTGAAATTGGTGGATAAAGTTCAACCAGAAGCTCAATTGAGGTGTCCGCTCCACAAGAAGATTGTTTCCATCGATTTCTCCAGTTTCGGAGATCC AAAAGGGACCTGTGGGAGTTATGCCATAGGAAATTGTAGCTCGCCACTGTCAGAATCAATTGTTCACAAGCTCTGCATTGGGAAGAATGGATGTGATATC CCAGTGGAAAGGAAGCTTTTCGACGGGATTGAGGATCATTGTCAGCAGATGCAGAAGAGATTAGCAGTTCAGGTGAAGTGTGGCTAA
AA sequence Show only first row Show all	>Lus10014126 pacid=23156782 polypeptide=Lus10014126 locus=Lus10014126.g ID=Lus10014126.BGIv1.0 annot-version=v1.0 MASIVGAMITTLLVVVLFSSSAAATEEEKGVRYDGRSLIINGKRRLLFSGSIHYPRSTPDMWPDLLGKAKRGGLNVIQTYVFWNVHEPIQGQYNFQGRND IVKFIRTIGEMGMYATIRVGPFIEAEWNHGGFPFWLREVKNITFRTDNPPFKYHMRKFVEMIVEKLKGERLFASQGGPIIMSQVENEYGNVEGVFKDSGS RYVQWAGTMVQRLETGVPWTMCKQIDAPDPLINTCNGRHCGNTFFGPNRPNKPSLWTENWTSHYTVFGDPQHYRRSEELAFSVARWFAGNGTHVNYYMYY GGTNFGRTTSPFSTTQYYDEAPVDEYGLEREPKWGHLKDLHRALKLSQKALLWGNPSVWMLSEDVEVCVYDFPRKNVCAAFLTNNNTKLGATVEFRGKEY YLPSSSVSILPDCKTVVYNTNTVVSQHNARNFVRSRLANLKLKWEMYREVIPTQLGHTSLQPHELYNLTKDTTDYAWYTTKIHVEEEDLAMERSSLELHV ASLGHAMVAFVNGEFVGAAHGSHVEKSFVLKAPINLKPAETNSITLLGSIMGLPDSGAYMERRYAGPRGVSIIGMKSGRLDLSSNGWGHQVGLDAEKAEV YTEDGSRRVKWIPIQKQRRSLTWYKTYFYAPEGRNPVAVRMTGMGKGMVWINGNSIGRYWMSYLSPLGQPTQSEYHIPRSFLKRRWNLMVILEEEEGANL EKIEILTVDRNTICSDIAEDHIPTVKSWGRQQGQILKLVDKVQPEAQLRCPLHKKIVSIDFSSFGDPKGTCGSYAIGNCSSPLSESIVHKLCIGKNGCDI PVERKLFDGIEDHCQQMQKRLAVQVKCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	1.0	1.0000
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	2.0	1.0000
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	2.4	1.0000
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	2.8	0.9885
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	3.9	0.9739
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	4.2	0.9651
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	4.5	0.9295
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	4.6	0.9586
					Lus10013881 [exp]	4.9	0.9563
					Lus10030782 [exp]	5.2	0.9466

Compare expression of checked genes

Lus10014126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.