Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20990 752 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 745 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 519 / 1e-180 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 315 / 1e-104 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 224 / 5e-66 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 206 / 4e-59 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 190 / 9e-54 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 120 / 1e-30 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 102 / 7e-23 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 93 / 9e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019782 [exp] 951 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10017268 [exp] 797 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005069 [exp] 793 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10013563 [exp] 789 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027842 [exp] 709 / 0 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 575 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 539 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 516 / 6e-180 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 509 / 2e-176 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134200 [exp] 825 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 820 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 785 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 760 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 582 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 577 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 231 / 9e-69 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 231 / 2e-68 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 208 / 4e-60 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 172 / 4e-47 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10014127 pacid=23156868 polypeptide=Lus10014127 locus=Lus10014127.g ID=Lus10014127.BGIv1.0 annot-version=v1.0 ATGAGCTTCTTCAGTATGATATTCGGCTTCGTCGGCTTCGGAGTCGGGATTTCCACGGGGCTCGTGATTGGATACTTCCTCTTCATCTACTTCGCTCCCG CAGCTGTCCAAGATCCTGAGGTTCTTCCATTAGCTGAACAAGATGAAGTTACTCTTCAGCGGATGTTTCCTGAGATCCCTCCCTGGATTAAAAATCCTGA CTACGAACGCATTGATTGGCTGAACAAGTTCATTGACTGCATGTGGCCGTACCTAGATAAGGCCATTTGCAAGACGGCATTAGAGATTGCAAAGCCGATA ATCGCCGAACAGATACCAAAGTTGAAGATTGACTCTGTGGAATTCGATAAGCTAACGCTTGGATCACTGCCACCCACTTTTCAAGGGATGAAAGTTTATG TGACTGATGAGAAGGACTTGATAATGGAACCTTGCATCAAGTGGGCAGGGAACCCAGATGTCACCGTTGTTGTTAAAACATTCGGATTGAAAGCTACCGC ACAAGTTTTGGATCTGCAAGTTTTTGCTTCTCCTCGGATAACTCTGAAGCCTTTGGTTCCTAGTTTCCCCTGCTTTGCCAAAATATTTGTGTCACTAATG GAGAAGCCTCATGTTGACTTCAGACTCAAGCTTCTAGGAGCAGATCTTATGGCGATTCCAGGAGTGTACAGGCTTGTTCAGGAGATAATCAAAGATCAGG TTGCAGACATGTACCTGTGGCCTAAAACTCTTGAAGTTCAAGTTTTGGATCCTGAAAAAGCAATGAAGCGGCCTGTTGGAATTCTGCATGTGAAAGTGCT GAGGGCAATGAGGCTGAGGAAGAAAGACCTACTTGGTGCATCGGACCCATATGTAAAACTTAAGCTGACGGAGGATAAAGTTCCATCCAAGAAGACAACA GTAAGGCACAACAACTTGAACCCCGAGTGGAATGAAGAGTTTAGTATGACCGTTAGAGATCCACAGACGCAGGCTTTGGAGCTTAATGTATATGACTGGG AACAGGTAGGCAAACATGACAAGATGGGGATGAATGTGGTTCCTCTGAAAGAGATTCCTCCAGAAGAGACGAAAGTGATGACTCTTGACCTACTTAAGAC AATGGATCTAGATGACCCTCAAAATGAAAAATCAAGAGGGCAGGTTGCAGTTGAACTGACTTTTAAGCCATTCAAAGAAGAGGACATGCCAAGTAGTTTC GAGGAGACGCAAAGTGTGGAGAAGGCGCCAGAGGGAACTCCTGCTGGTGGAGGTTTGCTTGTAGTCATAGTCCATGAAGCTCAAGATGTTGAAGGAAAAC ATCATACAAATCCGTATGTGCGGATTACTTTCAAGGGCGAGAAGAAAAAAACCAAGCATATTAAGAAGAACAGAGATCCAAGGTGGGAAGAGGAATTCCA ATTCATGTTGGACGAACCTCCCACCAACGAGAAACTACACGTCGAAGTCTTGAGCAGCTCTAAACGGATGGGCTTGCTTCATCCAAAGAAGCAACTACTT TTCTGCTTACATCAGGAAGCTCTGGGTTATGTGGTGATCAATCTAGGAGATGTAGTGAACAACAAGAGAATTAACGAGAAGTACCATCTCATAGACTCCA AGAACGGCAAGATTCAACTTGAGTTGCAGTGGGGAGCGGCTACATAA
AA sequence Show only first row Show all	>Lus10014127 pacid=23156868 polypeptide=Lus10014127 locus=Lus10014127.g ID=Lus10014127.BGIv1.0 annot-version=v1.0 MSFFSMIFGFVGFGVGISTGLVIGYFLFIYFAPAAVQDPEVLPLAEQDEVTLQRMFPEIPPWIKNPDYERIDWLNKFIDCMWPYLDKAICKTALEIAKPI IAEQIPKLKIDSVEFDKLTLGSLPPTFQGMKVYVTDEKDLIMEPCIKWAGNPDVTVVVKTFGLKATAQVLDLQVFASPRITLKPLVPSFPCFAKIFVSLM EKPHVDFRLKLLGADLMAIPGVYRLVQEIIKDQVADMYLWPKTLEVQVLDPEKAMKRPVGILHVKVLRAMRLRKKDLLGASDPYVKLKLTEDKVPSKKTT VRHNNLNPEWNEEFSMTVRDPQTQALELNVYDWEQVGKHDKMGMNVVPLKEIPPEETKVMTLDLLKTMDLDDPQNEKSRGQVAVELTFKPFKEEDMPSSF EETQSVEKAPEGTPAGGGLLVVIVHEAQDVEGKHHTNPYVRITFKGEKKKTKHIKKNRDPRWEEEFQFMLDEPPTNEKLHVEVLSSSKRMGLLHPKKQLL FCLHQEALGYVVINLGDVVNNKRINEKYHLIDSKNGKIQLELQWGAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10014127 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	12.8	0.8961
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	12.8	0.8798
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	16.9	0.8948
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	22.2	0.8566
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	25.1	0.8807
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	32.5	0.8376
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	35.3	0.8721
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	37.7	0.8386
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	39.0	0.8639
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	46.2	0.8565

Compare expression of checked genes

Lus10014127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.