Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35000 413 / 9e-147 APX3 ascorbate peroxidase 3 (.1) AT4G35970 360 / 7e-126 APX5 ascorbate peroxidase 5 (.1) AT1G07890 307 / 1e-105 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 299 / 2e-102 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G08390 233 / 1e-74 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 229 / 2e-72 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 122 / 2e-32 APX6 ascorbate peroxidase 6 (.1) AT4G17690 86 / 3e-19 Peroxidase superfamily protein (.1) AT4G09010 82 / 1e-17 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT5G47000 79 / 1e-16 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019781 [exp] 544 / 0 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 348 / 4e-121 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 317 / 1e-108 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10013537 [exp] 313 / 1e-107 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10019906 [exp] 309 / 3e-106 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10015970 [exp] 310 / 7e-106 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10025680 [exp] 229 / 1e-72 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 212 / 5e-66 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 130 / 1e-35 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134100 [exp] 431 / 5e-154 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 428 / 7e-153 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 408 / 6e-145 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 317 / 1e-109 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 312 / 1e-107 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 309 / 2e-106 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.005G179200 [exp] 230 / 3e-73 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 229 / 5e-73 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G089000 [exp] 121 / 2e-34 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 120 / 1e-31 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10014128 pacid=23156862 polypeptide=Lus10014128 locus=Lus10014128.g ID=Lus10014128.BGIv1.0 annot-version=v1.0 ATGGCGTACCCCGTCGTCGATGCCGCTTACGTCAAGGAAGTTGACAAGGCTCGCCGCGATCTCCGTGCTCTCATCTCCTCCAAGAACTGCGCTCCGATCA TGCTCCGCTTGGCTTGGCACGACGCCGGGACGTATGATAAGAACACCAAGACCGGTGGACCTAATGGCTCCATTAGGAACGACGAGGAGCTGGCTCACGG TGCTAACAGTGGCTTGAAGATCGCTCTCGATTTCTGCGAGGAAGTGAAGGCCAAGCATCCTAAAATCACTTACGCCGATTTGTTCCAGCTGGCTGGTGTC GTTGCAGTTGAGGTAACTGGAGGTCCAACCATCGACTTTCTCCCTGGCAGGAAGGATTCAAAAATTTCCCCCAAGGAAGGGAGACTTCCGGATGCCAAAC AAGGTTCAATGCATTTGAAAGACGTATTCCATAGGATGGGTCTGTCTGATAAGGATATTGTAGCACTGTCAGGAGCCCATACTCTGGGAAGGGCACATTC AAATAGATCAGGCTTTGAAGGCCCATGGACCAAGGAACCACTGAAGTTTGACAATACATATTTCGTGGAACTGCTGAAGGGTGAGACTGAGGGACTACTC AAACTCTCAACTGACAACGCCTTGTTGGATGATCCAGCTTTCCGTCCTTTCGTTGAGCTTTATGCAAAGGATGAGGAAGCATTCTTCAAGGACTACGCTT CCGCGCACAAGAAACTCTCCGAACTTGGCTTTTCCCCATCCTCGAAAGTAACTCAGAAAGACAGCACCGTACTGGCACAGGGAGCAGTTGGAATAGTGGT AACTGCTGCAGTTATGTTCTTCAGCTACATGTACGAAGTCCACAGGCGATCCAAGTAG
AA sequence Show only first row Show all	>Lus10014128 pacid=23156862 polypeptide=Lus10014128 locus=Lus10014128.g ID=Lus10014128.BGIv1.0 annot-version=v1.0 MAYPVVDAAYVKEVDKARRDLRALISSKNCAPIMLRLAWHDAGTYDKNTKTGGPNGSIRNDEELAHGANSGLKIALDFCEEVKAKHPKITYADLFQLAGV VAVEVTGGPTIDFLPGRKDSKISPKEGRLPDAKQGSMHLKDVFHRMGLSDKDIVALSGAHTLGRAHSNRSGFEGPWTKEPLKFDNTYFVELLKGETEGLL KLSTDNALLDDPAFRPFVELYAKDEEAFFKDYASAHKKLSELGFSPSSKVTQKDSTVLAQGAVGIVVTAAVMFFSYMYEVHRRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	0	1
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	2.0	0.8080
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	2.4	0.8094
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	3.3	0.7584
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022769 [exp]	4.8	0.7326
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	5.7	0.7807
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	9.2	0.7785
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	9.9	0.7693
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	12.4	0.7435
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	14.8	0.7861
AT2G14910			unknown protein		Lus10013888 [exp]	15.8	0.7691

Compare expression of checked genes

Lus10014128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.