Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44770 271 / 2e-91 unknown protein AT4G24590 65 / 2e-12 unknown protein AT5G49710 62 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034500 [exp] 476 / 4e-172 AT1G44770 287 / 1e-97 unknown protein Lus10015965 [exp] 57 / 3e-09 AT5G49710 274 / 2e-93 unknown protein Lus10000765 [exp] 46 / 1e-05 AT5G49710 261 / 3e-88 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176500 [exp] 314 / 3e-108 AT1G44770 247 / 5e-82 unknown protein Potri.002G084900 [exp] 297 / 2e-101 AT1G44770 234 / 7e-77 unknown protein Potri.002G104200 [exp] 63 / 2e-11 AT5G49710 263 / 8e-89 unknown protein Potri.005G157500 [exp] 61 / 1e-10 AT5G49710 242 / 7e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014131 pacid=23156802 polypeptide=Lus10014131 locus=Lus10014131.g ID=Lus10014131.BGIv1.0 annot-version=v1.0 ATGGGAGGTCCCAAAGCTGCGATTGAAGTGGCGAAGACGGTCATCGAGGTGGCTGACGCGGCATGGACTGCCATGGAGTTCGGCCATCACCACCTCCATC ACCATGACGATCACAAGGCCGCCGCGGAACCGCTGTCTTTAGATGAAGAGATGGAGTGCGTAAGATCCGAGAATCGGCGGTTGAAGAGTTTACTCGAGCA CAATCTCAAACTCCTTCAGAATCTGGCTGACTCGCCTCGACTGATGAACGATTGCCCTCCTGATCTATATGCTCGCCTTGCTACTACTGTGGATTCTGAA AAATTCTTGGGTCAACTTAAAACCCTTCAAGAAGAATCCAGAAATGGAGTTACCCCTGGTTTCCCTTTCAAGGAGCCCTCAGGCGATGACTTAGAAGTTC TAATCAAGATTGACCAAGAAGAGCCTAGTCGGTGGGTATGGGTTACTGAAGAAATGGTTCATGGCAATGTTGAGGAATATAGTGGGATTGATAACGAGTC TTACGTCGTTATCAACGAGAATCAGGTGATTGATGCTGTAGCTACCTTTATGGCTAAGTGCATCACTGCAAACCCAAAATCTCAGAAGCTTTCTCCTGAG GAGCTCCAGAAAGCCCTCACGGAAGCTTTGTCTGGTGGATCTAGCAAGTTCGAGAGGGCAATTGGTATTTGGCATGCTGGTCAGCTGTTTTACGCACTTT CTACGTGGGGACTTGCATTGGTTGGGCTGTACAGGACTCGTGCTGTGCTGAAAGTTGCAGCCATGGGAATTCACTCTACCAGCAAAGTCGTCCTCCGAGC TCTTTGA
AA sequence Show only first row Show all	>Lus10014131 pacid=23156802 polypeptide=Lus10014131 locus=Lus10014131.g ID=Lus10014131.BGIv1.0 annot-version=v1.0 MGGPKAAIEVAKTVIEVADAAWTAMEFGHHHLHHHDDHKAAAEPLSLDEEMECVRSENRRLKSLLEHNLKLLQNLADSPRLMNDCPPDLYARLATTVDSE KFLGQLKTLQEESRNGVTPGFPFKEPSGDDLEVLIKIDQEEPSRWVWVTEEMVHGNVEEYSGIDNESYVVINENQVIDAVATFMAKCITANPKSQKLSPE ELQKALTEALSGGSSKFERAIGIWHAGQLFYALSTWGLALVGLYRTRAVLKVAAMGIHSTSKVVLRAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44770			unknown protein		Lus10014131 [exp]	0	1
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	1.0	0.9823
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	1.4	0.9805
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	1.7	0.9801
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	2.2	0.9724
AT5G49710			unknown protein		Lus10000765 [exp]	3.5	0.9732
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	3.7	0.9689
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	4.4	0.9633
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	5.4	0.9574
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	7.2	0.9578
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	8.0	0.9685

Compare expression of checked genes

Lus10014131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.