Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 391 / 2e-133 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT4G35985 389 / 2e-132 Senescence/dehydration-associated protein-related (.1) AT3G51250 361 / 2e-121 Senescence/dehydration-associated protein-related (.1) AT4G15450 190 / 3e-56 Senescence/dehydration-associated protein-related (.1) AT3G21600 176 / 8e-51 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 61 / 2e-10 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027840 [exp] 486 / 5e-168 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 426 / 3e-147 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 361 / 6e-125 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 363 / 5e-122 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 273 / 1e-88 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 196 / 1e-61 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 178 / 1e-51 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 175 / 1e-50 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 171 / 2e-49 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G133500 [exp] 459 / 2e-160 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 459 / 3e-160 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 420 / 1e-144 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 190 / 5e-56 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 162 / 7e-46 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10014132 pacid=23156765 polypeptide=Lus10014132 locus=Lus10014132.g ID=Lus10014132.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCCTACCAGAAACCCCTCTACCCAGAAGTCTATTACTCAAACCCAGAAAACCCCCCTTCTTCCTCCTCCTCCGCACCATCTCTTTCCCCGA CAATCGACCCCTCGGATTTCGTCGATAACCCCTTCGCCACCGATAACGGCGCCGCCGCCGCTTCCGCGCCTCCTCCCCGCGAGGAGGTCCTGATAAGAAT CCCAGGAGCAATAGTCCACATGATCGAGAAAGACTACAGCGTGGAGCTCGCCAGCGGCGACTTACAAATCGTCACTCTCAAGCAAGGCGAAACCTTCGTT GCGGCATTTTGTCGAATAGGTGGCGAGCACGACCACATCCAGTGGCCGCTGGCGAAAGACGAGGCAGCAGTGAAGCTCGATCAGTCCCATTACTTCTTCA CGCTCAGGGTACAGGAAGGGAACCAATTGGAGCTGTTGAATTACGGCGTGACCTTCGCGTCGAAAGGTCAGGAGGGGTTGTTGAATAGGTTTGATCTGGT GCTGGAGAGCTTCAGCGCGTTCTCGGTTCAGAAAGTGAAGGAGAAAGGAGAGGTTCTCGATGGGAATGTGGCTAGGGAGACTACAGCGGAGGAGTTTGGT AAAGAAGGGAAGAAGAAGGAGATGATGAAGGAGAGTTCTACTGCTTATTGGACTGTTTTAGCTCCTAATGTTGAGGATTACAGCAGCTCATCGGCTAGGA TGATTGCTTCTGGATCGGGCCATGTGATTAAGGGGATCTTGTGGTGTGGGGATGTGACTACTGATAGGTTGAAGTGGGGGAATGGGTTTTTGATGAAGAG GATCAAGAAGGGTGAAAATGCTGAAGTCAGTCCTGCTACATTGAGAAGAATCAAAAGAGCCAAGAGACTGACTAAAATGTCCGAGAAAGTGGCGGTTGGG ATCCTCTCCGGAGCAGTCAAAGTTTCTGGATCCCTGGCAAGTCCTTTTGTGAACTCGAAAGCTGGAAAGAAATTCTTCGGCATTTTGCCTGGAGAACTCA TCCTTGCTTCCTTGGATGGATTCAACAAGATTTGCGATGCATTTGAACATGCTGGAAAGAATGTCATGTCAACCTCGTCAGAAGTGACAACCGGTCTCGT CTCACACAAGTATGGAGAGGAAGCTGGAAAGGCGACGAACGAAGGGCTTGACGCTGCAGGGCACGCGATAGGGACTGCCTGGGCTGTAATGAAGTTAAGG AAGGCTTTAAACCCAAAGAGTGCGTTGAAGCCATCATCTATAGCAAAGGCAGCTGCAAAGGCAAGTGCTGCTGATCTGAAATCCAAGTCCACGAAGTAA
AA sequence Show only first row Show all	>Lus10014132 pacid=23156765 polypeptide=Lus10014132 locus=Lus10014132.g ID=Lus10014132.BGIv1.0 annot-version=v1.0 MASPYQKPLYPEVYYSNPENPPSSSSSAPSLSPTIDPSDFVDNPFATDNGAAAASAPPPREEVLIRIPGAIVHMIEKDYSVELASGDLQIVTLKQGETFV AAFCRIGGEHDHIQWPLAKDEAAVKLDQSHYFFTLRVQEGNQLELLNYGVTFASKGQEGLLNRFDLVLESFSAFSVQKVKEKGEVLDGNVARETTAEEFG KEGKKKEMMKESSTAYWTVLAPNVEDYSSSSARMIASGSGHVIKGILWCGDVTTDRLKWGNGFLMKRIKKGENAEVSPATLRRIKRAKRLTKMSEKVAVG ILSGAVKVSGSLASPFVNSKAGKKFFGILPGELILASLDGFNKICDAFEHAGKNVMSTSSEVTTGLVSHKYGEEAGKATNEGLDAAGHAIGTAWAVMKLR KALNPKSALKPSSIAKAAAKASAADLKSKSTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	0	1
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	1.4	0.9326
AT4G22560			unknown protein		Lus10028927 [exp]	2.8	0.9344
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	3.5	0.9168
AT4G32020			unknown protein		Lus10005344 [exp]	4.6	0.9204
AT5G62140			unknown protein		Lus10015008 [exp]	6.3	0.9108
AT1G65720			unknown protein		Lus10010961 [exp]	8.5	0.9076
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Lus10041612 [exp]	8.8	0.8908
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	9.0	0.9074
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	10.2	0.9030
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	10.9	0.9024

Compare expression of checked genes

Lus10014132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.