Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12550 290 / 3e-97 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 270 / 3e-89 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G79870 197 / 7e-61 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 83 / 3e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72190 61 / 3e-10 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G68010 57 / 7e-09 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G17745 57 / 7e-09 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 56 / 2e-08 D-3-phosphoglycerate dehydrogenase (.1) AT4G34200 54 / 7e-08 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT5G14780 51 / 5e-07 FDH formate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006708 [exp] 538 / 0 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041393 [exp] 244 / 3e-79 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 243 / 1e-78 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 224 / 2e-71 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 222 / 2e-70 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 211 / 2e-66 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 197 / 8e-61 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 193 / 2e-59 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10040679 [exp] 163 / 5e-48 AT2G45630 124 / 1e-34 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113250 [exp] 316 / 4e-107 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 309 / 2e-104 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 273 / 8e-90 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 271 / 2e-89 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 265 / 5e-87 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 246 / 8e-80 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 212 / 7e-67 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 201 / 1e-62 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073600 [exp] 61 / 7e-12 AT2G45630 73 / 4e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.004G175800 [exp] 65 / 2e-11 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10014133 pacid=23152932 polypeptide=Lus10014133 locus=Lus10014133.g ID=Lus10014133.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCCGGCGAGGATTCTTCCCTCCCCTTAATCCTAATCCACCGCTATCCATCCTTCACCGGTTCCATATTCCCCGCCTTATCCACTCACTTCC GCCTCATCGACCCGCTCAGCCCCGACGCTTCACCGTCAATTCTACGATCCGCCACAGCTGTCCTGTGCGTCGGACCTCCGCCACCTGTCACCTCCGATTT CCTCGATCGATTTCCCTCCATCGGGATCGTTGTCTGCTCAAGCGTTGGAGTCGACCACGTTGACCTCGCCGAGTGTCGGCGGAGAGGCGTCGCCGTCACC AACGCCGGCTCCGCCTTCGCGGAGGACGTAGCCGACTACGCCGTCGCGTTGCTGATTGACGTTTTGAGCAGCATTTCGGCGGGTGATCGGTACGTTCGCG CCGGCTGCTGGCCCGTTAAAGGAGATTATCCTCTTGGCTCCAAGTGGTCCTTTTACCAGCTGGGAGGGAAACGAGTCGGGATTCTAGGACTCGGACGAAT CGGCTCATTGATCGCGACTCGTTTGGCGGCGTTCGGCTGCCCGATCAGCTACTGTTCTCGGAGCGAGAAGCCATCTCTGCTCTTTCGATTCCACTCCACC GCTCTTGCTCTGGCGGAAAACAACGATATCCTGATCGCGTGTTGCAGTCTGACCGACGAGACCTTCCACGTGATCGACGGCAAGGCCATGAAGGCGCTAG GCAAACGAGGAGTGATCGTCAATGTCGGACGTGGAGCCCTAATCGACGAGAAGGAGCTCGTTCAGTTTCTCATCCGCGGTGATCTCGGCGGCGCCGGATT GGACGTGTTCGAGGACGAGCCGAACGTGGCCAAGGAACTCTTCGCGTTGGATAACGTCGTGCTGTCGCCGCATTCCGCCGTGATCACCCCAGAGTCGATC GGAGCTTCACAGGATATCTCGATCAGGAATCTGAAGGCGTTCTTCTCCAAGCAACCTCTGATTTCGCCGGTCTAG
AA sequence Show only first row Show all	>Lus10014133 pacid=23152932 polypeptide=Lus10014133 locus=Lus10014133.g ID=Lus10014133.BGIv1.0 annot-version=v1.0 MAAAGEDSSLPLILIHRYPSFTGSIFPALSTHFRLIDPLSPDASPSILRSATAVLCVGPPPPVTSDFLDRFPSIGIVVCSSVGVDHVDLAECRRRGVAVT NAGSAFAEDVADYAVALLIDVLSSISAGDRYVRAGCWPVKGDYPLGSKWSFYQLGGKRVGILGLGRIGSLIATRLAAFGCPISYCSRSEKPSLLFRFHST ALALAENNDILIACCSLTDETFHVIDGKAMKALGKRGVIVNVGRGALIDEKELVQFLIRGDLGGAGLDVFEDEPNVAKELFALDNVVLSPHSAVITPESI GASQDISIRNLKAFFSKQPLISPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	0	1
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	2.0	0.8455
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	8.2	0.8594
AT1G55170			unknown protein		Lus10037647 [exp]	10.4	0.7949
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	10.7	0.8165
AT1G71910			unknown protein		Lus10016934 [exp]	16.0	0.8257
AT5G06280			unknown protein		Lus10016973 [exp]	31.1	0.7991
AT1G01840			unknown protein		Lus10036553 [exp]	36.3	0.7725
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	40.0	0.7868
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	41.7	0.8054
AT4G24370			unknown protein		Lus10010164 [exp]	43.4	0.7505

Compare expression of checked genes

Lus10014133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.