Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22890 448 / 1e-159 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5) AT4G11960 426 / 6e-151 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT5G59400 67 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006710 [exp] 593 / 0 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5) Lus10040799 [exp] 69 / 6e-13 AT5G59400 316 / 3e-108 unknown protein Lus10016531 [exp] 66 / 5e-12 AT5G59400 311 / 2e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G119200 [exp] 474 / 6e-170 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 469 / 1e-167 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5) Potri.009G032300 [exp] 79 / 2e-16 AT5G59400 343 / 8e-119 unknown protein Potri.001G241400 [exp] 72 / 4e-14 AT5G59400 357 / 2e-124 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014135 pacid=23152908 polypeptide=Lus10014135 locus=Lus10014135.g ID=Lus10014135.BGIv1.0 annot-version=v1.0 ATGGCTAGCAAGTTCTCCATCAGTGTGACGTCTCCTCGGCTCTTCTCTGCTCCGATTCGCAAGCCTTTCATTTCTTCTGTGTCTTCCAAGGCGGCTCAGC CGCTTGCTAACGGAAGAAGAAGACAACTTATTCCTACTCGGAGAAGGGTTTTCTTGGTTCCTGTCAGGGCTACTGCTGATCAGCAAGGTCAGGTTCAGGA AGATGAAGTAGTGGACGGAAAGATTCTGAACTACTGCAGCATAGACAAGAAGGACAAGAAATCAATGGGAGAAATGGAGCAGGACTTTCTTCAAGCTCTA CAATCATTTTACTACGAAGGGAAAGCGATAATGTCTAACGAGGAATTCGACAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGTGTTGTTATGCTTT CTGCTGATGAGCAAAGGTTCTTGGAAGCGTCAATGGCATATGTAGCTGGGAAACCTATTCTGAACGATCAAGAGTTTGATGAGCTTAAACTTAAGTTAAA GTCAGAAGGCAGTGAAATTGTGGTTGAAGGTCCAAGATGCAGTCTCCGGAGTAAAAAGGTCTATAGCGACCTTTCTGTGGACTACCTCAAGATGCTTCTT TTGAATGTTCCAGCCACTGTTATTGCACTTGGTTTGTTCTTCTTCTTGGATGATGTGACCGGGTTCGAGATCACTTATCTTTTGGAACTGCCGGAACCAT TCAGTTTCATCTTCACATGGTTTGCTGCTGTGCCTCTCATAGTCTGGTCAGCTCTGACCCTTACAAATGCGATCATCAAGGATTTCACCATACTCAAGGG CCCTTGTCCAAACTGTGGCACTGAGAATGTCTCATTCTTCGGATCCATACTGACAATCTCCAGCGGCGGGACCACCAACAACCTCAAGTGCTCTGACTGT GGAACCCAGATGATCTATGATGCTCGTTCGCGGTTGATCACCTTACCAGATTGA
AA sequence Show only first row Show all	>Lus10014135 pacid=23152908 polypeptide=Lus10014135 locus=Lus10014135.g ID=Lus10014135.BGIv1.0 annot-version=v1.0 MASKFSISVTSPRLFSAPIRKPFISSVSSKAAQPLANGRRRQLIPTRRRVFLVPVRATADQQGQVQEDEVVDGKILNYCSIDKKDKKSMGEMEQDFLQAL QSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSADEQRFLEASMAYVAGKPILNDQEFDELKLKLKSEGSEIVVEGPRCSLRSKKVYSDLSVDYLKMLL LNVPATVIALGLFFFLDDVTGFEITYLLELPEPFSFIFTWFAAVPLIVWSALTLTNAIIKDFTILKGPCPNCGTENVSFFGSILTISSGGTTNNLKCSDC GTQMIYDARSRLITLPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	0	1
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	1.0	0.9732
AT4G01150			unknown protein		Lus10003031 [exp]	3.0	0.9585
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	3.2	0.9545
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	3.2	0.9665
					Lus10001769 [exp]	3.6	0.9452
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	3.7	0.9506
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	4.2	0.9526
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	5.3	0.9446
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	5.7	0.9483
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	6.9	0.9554

Compare expression of checked genes

Lus10014135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.