Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 47 / 1e-06 F-box family protein (.1) AT3G23880 45 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT4G12560 39 / 0.0009 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006687 [exp] 119 / 8e-33 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10011015 [exp] 106 / 3e-27 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10023263 [exp] 76 / 2e-17 AT3G23880 49 / 6e-07 F-box and associated interaction domains-containing protein (.1) Lus10026587 [exp] 49 / 5e-07 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10031512 [exp] 48 / 1e-06 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10043335 [exp] 46 / 5e-06 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10013873 [exp] 44 / 2e-05 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10028961 [exp] 43 / 6e-05 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 42 / 0.0002 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013000 [exp] 53 / 2e-08 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 49 / 7e-07 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 46 / 4e-06 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 45 / 1e-05 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.016G012601 [exp] 44 / 2e-05 AT4G12560 79 / 4e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.015G013800 [exp] 43 / 3e-05 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 43 / 4e-05 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.001G318300 [exp] 41 / 0.0002 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.015G011000 [exp] 40 / 0.0004 AT3G17490 77 / 8e-16 F-box and associated interaction domains-containing protein (.1) Potri.010G154601 [exp] 39 / 0.0005 AT4G12560 85 / 3e-19 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014136 pacid=23152885 polypeptide=Lus10014136 locus=Lus10014136.g ID=Lus10014136.BGIv1.0 annot-version=v1.0 ATGCCACGGATTTTCCTTCTTACCGGAGGAGATGGTGTATGTCATATTGGTCAAACTTCCGGCGAAGACTCTGTTACGATTCAAGTGCTTGTCCAATCAC ATTCACAATCTCATTCAACTCCATACTTCGTTGCTGCACACGCCGAACATCAGCACACGAATCATGCCTGCATCTCCCTCCTCGGTTATTGCTTCGGGGA GGGAGATGCAGGGTATAAAACTAGTAATGGTGTTGTTTCTTGCTTCTCCTTCCCCTTTCTGGAGAACGTTATATATTGTCCCTTTTTGCAATATGTGGGA TCATGGAATGGTTTAGTCTGTTTCGAAATATTCATAGATATTCCACCAATTATACTTGTGTGGAATCCAACCACCTCCGAATTCGCCTTTGCTCCTCGTC CTCTTCGTATGGTTGATTATGATAGCTGCTTAGTAAGGTTTTACGGATTTAGTTATGATTCAGTGTCGGATGATTATAAGTCCATTAAGATTGTTATCCC GATCGATGTTCTATCCGAAGCAGAGGTTCTGGGCTAG
AA sequence Show only first row Show all	>Lus10014136 pacid=23152885 polypeptide=Lus10014136 locus=Lus10014136.g ID=Lus10014136.BGIv1.0 annot-version=v1.0 MPRIFLLTGGDGVCHIGQTSGEDSVTIQVLVQSHSQSHSTPYFVAAHAEHQHTNHACISLLGYCFGEGDAGYKTSNGVVSCFSFPFLENVIYCPFLQYVG SWNGLVCFEIFIDIPPIILVWNPTTSEFAFAPRPLRMVDYDSCLVRFYGFSYDSVSDDYKSIKIVIPIDVLSEAEVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	2.8	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	4.0	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	4.9	1.0000
					Lus10024141 [exp]	5.7	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	6.3	1.0000
					Lus10013255 [exp]	6.9	1.0000
					Lus10013259 [exp]	7.5	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	8.0	1.0000
					Lus10028570 [exp]	9.0	1.0000
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10029435 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10014136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.