Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12560 366 / 1e-128 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT1G62980 343 / 7e-120 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT3G55500 272 / 8e-92 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT4G01630 271 / 1e-91 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT2G39700 271 / 4e-91 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G28950 269 / 1e-90 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT2G37640 261 / 2e-87 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 260 / 4e-87 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G40610 256 / 1e-85 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G69530 253 / 7e-84 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006711 [exp] 539 / 0 AT1G12560 363 / 9e-128 expansin A7 (.1) Lus10024478 [exp] 473 / 9e-171 AT1G12560 360 / 2e-126 expansin A7 (.1) Lus10002997 [exp] 360 / 5e-127 AT1G62980 289 / 2e-99 EXPANSIN 18, expansin A18 (.1) Lus10040286 [exp] 278 / 8e-94 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 273 / 6e-92 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040801 [exp] 268 / 3e-90 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10009253 [exp] 268 / 4e-90 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10016533 [exp] 267 / 7e-90 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10038013 [exp] 267 / 1e-89 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112900 [exp] 407 / 1e-144 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.010G202500 [exp] 272 / 8e-92 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G057100 [exp] 271 / 1e-91 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.001G240900 [exp] 269 / 2e-90 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 268 / 3e-90 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.002G184700 [exp] 268 / 3e-90 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.006G108000 [exp] 268 / 4e-90 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 265 / 4e-89 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G086100 [exp] 263 / 3e-88 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.019G057500 [exp] 257 / 5e-86 AT2G40610 374 / 2e-132 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10014137 pacid=23152955 polypeptide=Lus10014137 locus=Lus10014137.g ID=Lus10014137.BGIv1.0 annot-version=v1.0 ATGGCTTTTGTAAGCTGGAACACAAGCTGTACAGTTAGTTTCTACTTCATGGTAGCAGTAATGGCTGCTACAGCTGGTCTAATTTTTGTAGAACCAGTAG ATGCAGCTGGCTATGGAACCACAGCCACCCGTCATGTGCCCGTCTTTCGGCCTAGCCGGTGGTCCCTAGCCCACGCTACGTTCTATGGTGACGAAACTGC CTCCGCGACAATGGGGGGAGCTTGCGGGTACGGAAACTTGTTCCAAAATGGGTACGGGACAGACACTGCAGCGCTTAGCACGACGTTGTTCAACAATGGG TACTCGTGCGGGGCGTGTTACCAGATCAAATGTGCGTACTCCCCGCATTGTTACTCGAATGTGGCATTCACGACCGTGACCGCTACGAACATCTGTCCTC CGAACTGGTCGCAGGACTCCAACAACGGCGGGTGGTGCAACCCTCCTAGGTCCCACTTCGACATGTCCAAGCCCGCTTTTATGAAGATCGCGGACTGGAA GGCCGGGATCATCCCAATCATGTTCCGCAGGGTGCCATGCGTGACGAAAGGTGGGATTCGGTTCCAATTCCAAGGGAATGGGTATTGGTTGTTGGTGTAT GTGATGAATGTTGGGGGAGGAGGAGACATTGCTCAAATGTGGGTTAAAGGAAGCAAGACAAGTTGGATAAGCATGAGCCATAATTGGGGAGCTTCATACC AAGCATTTTCAAGCTTGGGTGGCCAATCACTCTCTTTCAAAGTCCAATCCTACTCCACTAAGGAGATCATCTATGCTTGGAATGTTGCACCTTCTAATTG GAATGTGGGGTTGACTTACAAGTCAAATGTCAACTTCCACTAA
AA sequence Show only first row Show all	>Lus10014137 pacid=23152955 polypeptide=Lus10014137 locus=Lus10014137.g ID=Lus10014137.BGIv1.0 annot-version=v1.0 MAFVSWNTSCTVSFYFMVAVMAATAGLIFVEPVDAAGYGTTATRHVPVFRPSRWSLAHATFYGDETASATMGGACGYGNLFQNGYGTDTAALSTTLFNNG YSCGACYQIKCAYSPHCYSNVAFTTVTATNICPPNWSQDSNNGGWCNPPRSHFDMSKPAFMKIADWKAGIIPIMFRRVPCVTKGGIRFQFQGNGYWLLVY VMNVGGGGDIAQMWVKGSKTSWISMSHNWGASYQAFSSLGGQSLSFKVQSYSTKEIIYAWNVAPSNWNVGLTYKSNVNFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	2.8	0.9288
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	3.5	0.9164
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	5.5	0.9048
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	5.7	0.8167
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	5.8	0.8071
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	6.9	0.8875
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	8.0	0.8720
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	8.1	0.8775
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	8.4	0.8564
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	8.8	0.8759

Compare expression of checked genes

Lus10014137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.