Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 131 / 1e-35 Protein of unknown function (DUF1191) (.1) AT1G62981 114 / 5e-29 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT4G22900 113 / 7e-29 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006712 [exp] 357 / 9e-124 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 160 / 8e-47 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 157 / 2e-45 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 154 / 2e-44 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 154 / 2e-44 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 152 / 2e-44 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 147 / 1e-42 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10007859 [exp] 49 / 1e-06 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 45 / 3e-05 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 183 / 7e-56 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 171 / 6e-51 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 77 / 6e-16 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 73 / 2e-14 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 60 / 3e-10 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 60 / 3e-10 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10014138 pacid=23152860 polypeptide=Lus10014138 locus=Lus10014138.g ID=Lus10014138.BGIv1.0 annot-version=v1.0 ATGACCAATCTTTACCCACTCATCCTCCTCATAATTCTCCTCTCATTCTCATCCGAATCTACCTCCAAAGAGATCCAATCACTAGGTTCTCTGGATCAAC TAATCCGAGACCATGTCGCAATATTCGAGTCCAACGACACGATGACAAACATGTACAAAACAGGGGAAGTCCACAGCGTCAACCTCCCATCATCCAACTT CTCTGGGATCACGGCTCAAGCAGCAAGGTTCCGGTGTGGCAGCCTGAAGCGATACGGCGCTCGATTCTATGAATTCGGGTTAGGAATCGGTGTCACGGTG TATCCATGTGTGGAGAGAGTGATGGTGGTCACATACAACTTGGGTTTCAATCGGTCAGCATCAATATTCCACAACCTCGACTCTACCTCCGGCTACCGAC TTGTGTCGCCAATCGTAGGCCTTACAGCCTACAATTTTGACGAAAAGAGCTCGAACCCATTTGAGATTCGAATCCGGTCTAGCCAAGGAAACCCATTAAT CACCATCAACTTCAACAACATTACTAGTACAACAACTCACACTGTCAAGTGTGCTAGCTTTGAGCAAGGTGGGAAATTGATCAGCCTGAAAGAACCCATT TCGCCTCAAGTGTGTGGATCAACATCCAACGGCCATTATGGGTTGGTGGTCGGGATTCCGGCGGCGCCGGCGGGGGGCGGAGGCAGGGCGAAGGTGGCGG CGTGGAAAGTTGCGGTGGGGAGCACTGTGGGGGGTGTTTTGGGAATTGGGCTTTTGGGTTTGCTTGTGGTGGCTATGGTGGTGAAGGTGAAGAAGAAAGC AAAGATTTTGGAGATGGAGAGAAGGGCTTATGAAGAGGAAGCTCTGCAGGTTTCCATGGTTGGACATTTCAGAACTCCTCTGGCTTCTGCTACTCGAACT CAACCCACCATTGACCATCCTCCTGTGAATACCTTGTAG
AA sequence Show only first row Show all	>Lus10014138 pacid=23152860 polypeptide=Lus10014138 locus=Lus10014138.g ID=Lus10014138.BGIv1.0 annot-version=v1.0 MTNLYPLILLIILLSFSSESTSKEIQSLGSLDQLIRDHVAIFESNDTMTNMYKTGEVHSVNLPSSNFSGITAQAARFRCGSLKRYGARFYEFGLGIGVTV YPCVERVMVVTYNLGFNRSASIFHNLDSTSGYRLVSPIVGLTAYNFDEKSSNPFEIRIRSSQGNPLITINFNNITSTTTHTVKCASFEQGGKLISLKEPI SPQVCGSTSNGHYGLVVGIPAAPAGGGGRAKVAAWKVAVGSTVGGVLGIGLLGLLVVAMVVKVKKKAKILEMERRAYEEEALQVSMVGHFRTPLASATRT QPTIDHPPVNTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	0	1
AT5G02640			unknown protein		Lus10025282 [exp]	1.4	0.9708
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	3.5	0.9682
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	3.9	0.9680
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	7.2	0.9653
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	7.5	0.9579
AT5G02640			unknown protein		Lus10009066 [exp]	9.2	0.9501
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	9.5	0.9607
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	11.0	0.9544
AT2G28410			unknown protein		Lus10022579 [exp]	11.0	0.9547
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	12.4	0.9261

Compare expression of checked genes

Lus10014138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.