Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11950 165 / 2e-49 Protein of unknown function (DUF1191) (.1) AT4G22900 158 / 1e-46 Protein of unknown function (DUF1191) (.1) AT1G62981 152 / 3e-44 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT3G08600 94 / 3e-22 Protein of unknown function (DUF1191) (.1) AT4G01140 69 / 3e-13 Protein of unknown function (DUF1191) (.1) AT4G23720 58 / 1e-09 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006713 [exp] 400 / 1e-141 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 247 / 3e-81 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 240 / 1e-79 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10024479 [exp] 196 / 6e-61 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 182 / 1e-55 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 174 / 5e-53 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1) Lus10006712 [exp] 169 / 5e-51 AT4G11950 226 / 3e-72 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 67 / 1e-12 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10028743 [exp] 61 / 2e-10 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112800 [exp] 203 / 3e-64 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 194 / 6e-61 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 101 / 6e-25 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 90 / 7e-21 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 80 / 2e-17 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 77 / 3e-16 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 73 / 8e-15 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10014139 pacid=23152899 polypeptide=Lus10014139 locus=Lus10014139.g ID=Lus10014139.BGIv1.0 annot-version=v1.0 ATGGTTGCTGCTGATCACTGCTCTTTCACCGTCATCATAATCATCGTTCTCCTCTCGTTGTCATCGTTGATAAAAGCTGACGATGAGATCAGAACACCGG ATGCCATTGATGAGATGATCAAGGACTACACATTCAAGTCACTTGGCATGAACAAGAGGATGAAGACAGGGGAAATCTACAATGTGGACCTTCCCGGTAA CCTTTCGGGGATTAAGGCGAATGCAGCGAGGTTTCGGTGTGGTAGCTTGAGGAGATATGGGGTCCGGTTCGATGAATTCGGGTTAGGAATTGGCTTGACC CTGAAGCCATGCTTGGTGAGAGTTCTGGTGATAGTACAGAGCTTGGGGCTCAATTGGTCATCTATCTACTCTGCAAATTATAACCTATCTGGTTATGAGC TTGCTTCGGAGATTCTCGGCCTTACTGCCTACGATTACAATGCCACCAGCATCATGATCAGCAACGGTTCGAGCTACTCCCCTTTCGAGGTTGGTATCCG TTCGAGCGAAGCAAACCCCATCACCATCGAATTCAGCACCACCACAAGTTACAACAACAACACTCTCTGTGCTGTCTTTTTCAAAGACGGCACAGTGAGG CTGACTCCTCCAATTTCGCCACGAGTATGCTGGTCAACAGCGGATGGACATTACGGGTTGGTGGTCAGGCAACAACCACCACCACCTGCTCACAACCGAA GCAAGAAGAAGAAGGTAATGCGAGTGGATTCACTAGAACATCTCCTGCTCTTGAGAATGAGCTTACGTTTTAGTGTTTGTTTTTCCTAG
AA sequence Show only first row Show all	>Lus10014139 pacid=23152899 polypeptide=Lus10014139 locus=Lus10014139.g ID=Lus10014139.BGIv1.0 annot-version=v1.0 MVAADHCSFTVIIIIVLLSLSSLIKADDEIRTPDAIDEMIKDYTFKSLGMNKRMKTGEIYNVDLPGNLSGIKANAARFRCGSLRRYGVRFDEFGLGIGLT LKPCLVRVLVIVQSLGLNWSSIYSANYNLSGYELASEILGLTAYDYNATSIMISNGSSYSPFEVGIRSSEANPITIEFSTTTSYNNNTLCAVFFKDGTVR LTPPISPRVCWSTADGHYGLVVRQQPPPPAHNRSKKKKVMRVDSLEHLLLLRMSLRFSVCFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	0	1
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	3.5	0.7570
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	7.3	0.7429
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	7.7	0.7541
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	9.3	0.7570
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	15.6	0.7528
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	19.5	0.7462
AT4G11950			Protein of unknown function (D...		Lus10006713 [exp]	22.3	0.7360
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10039392 [exp]	24.2	0.7417
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	31.4	0.6930
					Lus10040104 [exp]	43.6	0.7152

Compare expression of checked genes

Lus10014139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.