Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 70 / 6e-13 RNI-like superfamily protein (.1) AT3G58930 61 / 6e-10 F-box/RNI-like superfamily protein (.1) AT3G58940 60 / 1e-09 F-box/RNI-like superfamily protein (.1) AT2G42720 60 / 1e-09 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT3G28410 57 / 1e-08 F-box/RNI-like superfamily protein (.1) AT1G32020 54 / 1e-08 F-box family protein (.1) AT5G02910 56 / 2e-08 F-box/RNI-like superfamily protein (.1.2) AT4G14103 56 / 2e-08 F-box/RNI-like superfamily protein (.1.2) AT1G66300 56 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G41630 56 / 2e-08 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029587 [exp] 324 / 3e-109 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 320 / 6e-107 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 316 / 7e-104 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 303 / 7e-101 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10023042 [exp] 293 / 1e-97 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 299 / 7e-96 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 273 / 9e-88 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10006319 [exp] 221 / 2e-70 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 195 / 6e-59 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 116 / 3e-29 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 92 / 8e-21 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 87 / 4e-19 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 69 / 1e-12 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 63 / 1e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 61 / 3e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 59 / 2e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104200 [exp] 55 / 3e-08 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 53 / 1e-07 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121400 [exp] 53 / 2e-07 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10014141 pacid=23152925 polypeptide=Lus10014141 locus=Lus10014141.g ID=Lus10014141.BGIv1.0 annot-version=v1.0 ATGACCAAAAACAGTAGCAGGCAGTTAGAGAAGGCAGTCGGAGGAGTCGACAGAATAAGCAATCTACCCGACTCCATTCGTCACCACATCTTCTCATTCC TCGACACTCAATCCGCTGTCCAAACTTGTGTACTCTCCAAGCAGTGGGAATCCGCCTGGAAACATGTCCATGCTCTCAATCTGGACGTGAAATTCGATGA ATTCTCGAGGTATGAAAAGTTTGTGGACAAAGTGTTGTCCCTTCGCTATCCACTTCATGTTAGCGAGGTTTCATGCGTTACACATGCGTGGCCCAACTGC CCGATTGGTTCCGAGCTTAGTCTGTTCAAAAGGATCCTCCGATATACCGTGTACCGTGGTGCTCAACATTTGGACCTACGACGCAGCGATGATAGTAAAA ACTTTATCCCTCTTATGGAATTTTTGTATCGCATCGCTGACACTAACAGTGTAAGAACCCTACAGTTAGTGAGGTTTGACCTCAATTGTCGACATCAATA TTGTCGATTCCAGTTTCTGACAAAGTTAGAACTGAACTCTTGCCGGGTCTTAATTGACTGGGAGCTTGAGCCTTTTCCTCAATTCCGCTGTTTGAATGAT TTGGTCTTGGAATATTGCTCGTGGGTATGCAAAGATGATGATGTCCGAGCTTCGAGTTTGAGGATTTTCGGACTCAAGCTGGTTAAATTGAGCCTCAGAG ATCTTCATGTGTATGAGTTGGAAATATTTGCACCCAAACTCAAATCTTTATATGTTGAGGGATACATCGAATTCTCAAAGTTAACGCTTCCGTCCCTCAT TTGCGCTGATATTCGAAGCATTTGTATTGCTGACAAAGACCCTTTGGTCTCCATGTTCAATTCTCTACATAACGTAGAGTTTCTGACGCTATGTGACGAT TTGAGCATGGAAGTACTTGACATATCCAGTTTTCTACAGCAACAGCCAAATCCATTTACGAAATTGAAGAAGTTACATTTGCAGTATGTGTACAAAGACG AAATACCTTATAAGGTTCTGGATAATTATTTCTTTGACGAACATCTTCATGAGGGTATAAACATCCAAATTGTTGAGCTTTTGTCCTAA
AA sequence Show only first row Show all	>Lus10014141 pacid=23152925 polypeptide=Lus10014141 locus=Lus10014141.g ID=Lus10014141.BGIv1.0 annot-version=v1.0 MTKNSSRQLEKAVGGVDRISNLPDSIRHHIFSFLDTQSAVQTCVLSKQWESAWKHVHALNLDVKFDEFSRYEKFVDKVLSLRYPLHVSEVSCVTHAWPNC PIGSELSLFKRILRYTVYRGAQHLDLRRSDDSKNFIPLMEFLYRIADTNSVRTLQLVRFDLNCRHQYCRFQFLTKLELNSCRVLIDWELEPFPQFRCLND LVLEYCSWVCKDDDVRASSLRIFGLKLVKLSLRDLHVYELEIFAPKLKSLYVEGYIEFSKLTLPSLICADIRSICIADKDPLVSMFNSLHNVEFLTLCDD LSMEVLDISSFLQQQPNPFTKLKKLHLQYVYKDEIPYKVLDNYFFDEHLHEGINIQIVELLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18150			RNI-like superfamily protein (...		Lus10014141 [exp]	0	1
					Lus10009372 [exp]	4.0	0.9083
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	5.7	0.9083
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	6.9	0.9083
					Lus10000400 [exp]	8.0	0.9083
AT5G10560			Glycosyl hydrolase family prot...		Lus10019240 [exp]	8.5	0.6700
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	8.9	0.9083
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	9.8	0.9083
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	9.8	0.9048
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	10.6	0.9083
AT5G47880		ERF1-1	eukaryotic release factor 1-1 ...		Lus10031479 [exp]	12.4	0.8763

Compare expression of checked genes

Lus10014141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.