Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 54 / 2e-07 RNI-like superfamily protein (.1) AT5G02910 42 / 0.0007 F-box/RNI-like superfamily protein (.1.2) AT1G66300 42 / 0.0008 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G03360 42 / 0.001 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023042 [exp] 343 / 5e-116 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 345 / 2e-115 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 278 / 2e-89 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029587 [exp] 273 / 9e-88 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 280 / 8e-87 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 273 / 7e-86 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 256 / 3e-81 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029588 [exp] 217 / 2e-68 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1) Lus10006319 [exp] 213 / 3e-66 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 90 / 2e-19 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 60 / 1e-09 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 50 / 2e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 45 / 0.0001 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014142 pacid=23152929 polypeptide=Lus10014142 locus=Lus10014142.g ID=Lus10014142.BGIv1.0 annot-version=v1.0 ATGTTGTGTCAGTCGATGATGCCAAACGTTATTGGCTTGATCTCAAGCAATTTGCTAAACTCCATTCTTCACCACATCCTCTCCTTCCTTGACACTCAAT CTGCTATTAAGACTTGTGTATTGTCCAAGCAGTGTGAATGCACCTGGAAACATGTTCATACTCTGAATCTGGACCTGACATTCGATGAATACTTGAGGTA CGAAAGGTTCTTCGACAAACTCTTGTCCCTCCGATATCCCCTTCATGTTACCAAGGCTTTTCTATCATGGCATACATATGCCTACTCTAACGCTCCTGAT GGTTGGGAGACTAGTCTGCTCAGAAGGCTCGTCCAATATTCCGTGTCCCATGGTGCTCAACATTTCGACCTACGACCCGTCGTCCAATATGCAGTGTCTC ATGGTGCTCAACATTTCAACCTTCAACCCTTAAATCGTAATCATTCCAATATCGCTCTTCTCGAGTTGTTTGATTCCATCTCTGACTCTGTAAGAACCCT ACAATTAGTATGGTTTGACCTCGACTGTCGACCTGTATGTTCTGGATTCCAGTTGCTAACAACGTTGGAACTGTATTGTTGTCGGTTCTTAACCGATGGA GAGCTTGTTGATCCCTTTTCTCAATTCCCCTGTCTCAAAGATTTGGTCTTGGATAATTGCTCGATTAGTAGTAATGATGTTGATGACCAAGCTGTGAGAT TGAGGGTTTCTGGACTCGAGCTGGACAGGTTGAGCCTCTTAGGTATTAGCGTGTGGAAGCTAGAAATAGTTGCCCCGAAACTCAAGTCTTTCAGGTTGTA TTTCGAGGAATACATGAGGTTTTCGGAGCTGATCCTTCCGTCCCTCGTTCATGCTGATATTCAAAGCCAATGCTGGAACTCTACCTCTCAGGATTATGAT GTTGTGAAACAAAATCTAGTAACCATGTTCCATGGTTTACGTAACGTGGAATCTTTGACGCTATTCGACAATATGAGCAAGGATTTGGACTTGTGTGATT GTTGGGTAAGAATAGCTCCAGACCAAACTGTGAGATTGAGGGTTTCTGGACTGGAGTTGGACAGGTTGAGCCTCATAGGTATTGGAGTTGGGGAGTTAGA AGTAGTTGCACCCAAACTCCAGTCTCTCATATTGTATTTCGAGCATCTCATGGAGTTTGTAGAGCTAAGCCGTCCGTCCCACGTTCATGTTGAAATTAAA AGCTCCGACTGGAACCTTTTCGATGATGATACTGGCGAAAAACATATGCTCTTCATGTTCCGTAGTCTACATGATCGCGACAATAATGATGGTGATCACG TTAGGAAACAAGATTACAAAACAAGAAACTATGGAAACAGAAATCAACAGCAGAGTTTCTTTCGACTGATTGAGAACTGGTTTAATATCGTTCTTAAACC AGTCACTCTCACCTAA
AA sequence Show only first row Show all	>Lus10014142 pacid=23152929 polypeptide=Lus10014142 locus=Lus10014142.g ID=Lus10014142.BGIv1.0 annot-version=v1.0 MLCQSMMPNVIGLISSNLLNSILHHILSFLDTQSAIKTCVLSKQCECTWKHVHTLNLDLTFDEYLRYERFFDKLLSLRYPLHVTKAFLSWHTYAYSNAPD GWETSLLRRLVQYSVSHGAQHFDLRPVVQYAVSHGAQHFNLQPLNRNHSNIALLELFDSISDSVRTLQLVWFDLDCRPVCSGFQLLTTLELYCCRFLTDG ELVDPFSQFPCLKDLVLDNCSISSNDVDDQAVRLRVSGLELDRLSLLGISVWKLEIVAPKLKSFRLYFEEYMRFSELILPSLVHADIQSQCWNSTSQDYD VVKQNLVTMFHGLRNVESLTLFDNMSKDLDLCDCWVRIAPDQTVRLRVSGLELDRLSLIGIGVGELEVVAPKLQSLILYFEHLMEFVELSRPSHVHVEIK SSDWNLFDDDTGEKHMLFMFRSLHDRDNNDGDHVRKQDYKTRNYGNRNQQQSFFRLIENWFNIVLKPVTLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18150			RNI-like superfamily protein (...		Lus10014142 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042263 [exp]	3.2	0.8427
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	11.1	0.8117
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003865 [exp]	17.9	0.7410
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013334 [exp]	26.9	0.7753
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	33.0	0.8088
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	37.1	0.8043
					Lus10007078 [exp]	65.4	0.7184
AT5G52410			unknown protein		Lus10026416 [exp]	70.2	0.7691
AT5G37840			unknown protein		Lus10043472 [exp]	118.7	0.7500
AT3G20920			translocation protein-related ...		Lus10027362 [exp]	174.1	0.7283

Compare expression of checked genes

Lus10014142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.