Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22950 195 / 2e-62 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 183 / 8e-58 MADS AGL14 AGAMOUS-like 14 (.1) AT2G45660 176 / 5e-55 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G62165 164 / 2e-50 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G18960 152 / 5e-45 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 143 / 5e-42 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 142 / 3e-41 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G51860 140 / 3e-41 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 139 / 3e-40 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 137 / 1e-39 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006715 [exp] 347 / 1e-121 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10006716 [exp] 182 / 7e-58 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10014144 [exp] 179 / 8e-57 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10008264 [exp] 149 / 1e-43 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 149 / 1e-43 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003125 [exp] 141 / 1e-41 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10004638 [exp] 142 / 2e-41 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 140 / 4e-41 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003124 [exp] 141 / 1e-40 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112400 [exp] 214 / 8e-70 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 209 / 7e-68 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.002G151700 [exp] 194 / 5e-62 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074200 [exp] 193 / 2e-61 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G133000 [exp] 152 / 1e-45 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.013G104900 [exp] 146 / 2e-43 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 146 / 7e-43 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 145 / 7e-43 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115500 [exp] 142 / 3e-41 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.001G058400 [exp] 139 / 3e-40 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10014143 pacid=23152909 polypeptide=Lus10014143 locus=Lus10014143.g ID=Lus10014143.BGIv1.0 annot-version=v1.0 ATGGTGAGGGGGAAGACACAGATGAAGAGAATAGAGAACACGACGAGCAGGCAAGTGACTTTCTCCAAGAGGAGAAATGGGCTGCTGAAGAAGGCGTTTG AGCTCTCTGTTCTCTGTGATGCTGAAGTTGCGCTCATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTCTCCAGCTCTAGTATCACCAAAACGATAGA GCGGTACGAGAAGAAGCATAAGGATATCGGACAAGCAAGCAAAGAGTTTGAAGATAACACTCAGGATAACGATGGCTTTAGCATGGAGAAGAAGATAGAG CAACTCGAAATCTCAAAGCGGTTCAAGCCACTATCCTTTGAATGCATTAGACAACTAATGGGAGAATGTTTGGAAGCATGTTCCACTGTTGAGCTCAGAA AGATAGAGTGTCAGCTGGAGAGAAGCTTGAGTAGAATTAGGGCAAGAAAGAACCAGCTGTTCATGGATCAGATTGATAAGCTACGCGAAGAGGAGAAGAT CTTGTTGGAAGAGAACAAAAGGCTGAGGGACAAGTGTGGAGTGGAGCCAGTACTGAAGCTGTCGAATAACAGCAAGAAGCTGAAGCATCATCTTCATCAT CAACAACTGGAGATAATGGTTATAGCAGAAGCAGACGGTGGCGACGATGATGATAATGACGGAGGAAGTATGGAGGTGGAGACAGAGTTGTTCATAGGGC TAGGAAGACGATCAACAGCTAAAGCTAATTCCACATCTCCTCCTGCTAGAATCATGACTCCTACTCCTTGA
AA sequence Show only first row Show all	>Lus10014143 pacid=23152909 polypeptide=Lus10014143 locus=Lus10014143.g ID=Lus10014143.BGIv1.0 annot-version=v1.0 MVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSITKTIERYEKKHKDIGQASKEFEDNTQDNDGFSMEKKIE QLEISKRFKPLSFECIRQLMGECLEACSTVELRKIECQLERSLSRIRARKNQLFMDQIDKLREEEKILLEENKRLRDKCGVEPVLKLSNNSKKLKHHLHH QQLEIMVIAEADGGDDDDNDGGSMEVETELFIGLGRRSTAKANSTSPPARIMTPTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	0	1
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	2.0	0.9522
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	2.4	0.9281
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	2.8	0.9192
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042759 [exp]	2.8	0.9218
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	3.2	0.9180
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	7.7	0.9205
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	9.3	0.9277
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	9.9	0.9135
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10031549 [exp]	14.3	0.8485
AT2G38570			unknown protein		Lus10014180 [exp]	15.0	0.9074

Compare expression of checked genes

Lus10014143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.