Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22950 154 / 1e-47 MADS AGL19 AGAMOUS-like 19 (.1) AT2G45660 151 / 2e-46 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G11880 150 / 7e-46 MADS AGL14 AGAMOUS-like 14 (.1) AT5G62165 138 / 2e-41 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G09960 119 / 8e-34 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G45650 119 / 1e-33 MADS AGL6 AGAMOUS-like 6 (.1) AT5G51870 118 / 1e-33 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT5G51860 116 / 6e-33 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 117 / 8e-33 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G61120 116 / 2e-32 MADS AGL13 AGAMOUS-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006716 [exp] 310 / 2e-109 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10006715 [exp] 222 / 1e-73 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 189 / 7e-61 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10017870 [exp] 132 / 7e-39 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10036543 [exp] 120 / 3e-36 AT2G45660 120 / 6e-36 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10008264 [exp] 123 / 8e-35 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 123 / 9e-35 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10031665 [exp] 116 / 2e-33 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10034663 [exp] 115 / 1e-31 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112400 [exp] 159 / 1e-49 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 156 / 3e-48 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074200 [exp] 156 / 5e-48 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.003G119700 [exp] 155 / 5e-48 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 129 / 6e-38 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.013G104900 [exp] 119 / 1e-33 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 117 / 3e-33 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.015G134800 [exp] 118 / 5e-33 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.014G074100 [exp] 117 / 9e-33 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.004G064300 [exp] 116 / 1e-32 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10014144 pacid=23152881 polypeptide=Lus10014144 locus=Lus10014144.g ID=Lus10014144.BGIv1.0 annot-version=v1.0 ATGGTGAGAGGGAAGACGCAGATGAAGAGGATAGAGAACGCGACGAGCAGGCAAGTGACTTTCTCCAAGAGGAGAAATGGGCTGCTTAAGAAGGCGTTTG AGCTCTCTGTTCTCTGTGATGCTGAAGTTGCGCTCATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTCTCCAGCTCTAGAAGGCTAATGGGAGAATG TTTGGAAACATGTACCATTGGTGAGCTAAGGAAGTTAGAGTGTCAGCTGGAAAGAAGCTTGAGCAGACTTAGGGCAAGAAAGACCCAGCTGTTTATGGAG CAAATTGAGAAGCTAAGGGAAGAGTGTGGGATGAACACATTGATCCAGCTGGTGCCGAGTAACAAGAAACAACTTGGGTTAGTTGTTACGGAAGAAGATG GAGAAGAAGATAGAGAAAGCATGGAGGTGGAGACAGAGTTGTTCATAGGGCTAGCTGATCCTGCTAGAAGAAGACCAACAGCTAAGGCTTCTACCTCCCC TCCTGCTAGAATCATGACTCCTCCTCAATAA
AA sequence Show only first row Show all	>Lus10014144 pacid=23152881 polypeptide=Lus10014144 locus=Lus10014144.g ID=Lus10014144.BGIv1.0 annot-version=v1.0 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRRLMGECLETCTIGELRKLECQLERSLSRLRARKTQLFME QIEKLREECGMNTLIQLVPSNKKQLGLVVTEEDGEEDRESMEVETELFIGLADPARRRPTAKASTSPPARIMTPPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	0	1
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	2.4	0.8953
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	2.6	0.8842
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	3.2	0.9180
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	4.2	0.8581
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002020 [exp]	4.9	0.9069
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	5.7	0.8729
AT5G61820			unknown protein		Lus10015933 [exp]	10.1	0.8364
AT5G15802			unknown protein		Lus10022232 [exp]	10.2	0.8931
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	11.0	0.7914
AT1G49975			unknown protein		Lus10006137 [exp]	12.2	0.8952

Compare expression of checked genes

Lus10014144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.