Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11860 237 / 2e-69 Protein of unknown function (DUF544) (.1) AT4G22960 123 / 1e-29 Protein of unknown function (DUF544) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006717 [exp] 838 / 0 AT4G11860 606 / 0.0 Protein of unknown function (DUF544) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112300 [exp] 316 / 8e-99 AT4G11860 603 / 0.0 Protein of unknown function (DUF544) (.1) Potri.003G119800 [exp] 306 / 8e-95 AT4G11860 575 / 0.0 Protein of unknown function (DUF544) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04424 [flax] [poplar] MINDY_DUB MINDY deubiquitinase
Representative CDS sequence Show only first row Show all	>Lus10014145 pacid=23152913 polypeptide=Lus10014145 locus=Lus10014145.g ID=Lus10014145.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGAAATGGTTTTCCTGGATTATGTATGGGGCTCATGCATCTTCATATAGGATGTTGGACTTTGATGCAAGTTGATCGTGCTTGGATAAATG ATTTTGAGTTCACCCGTGAATGCGCCATATTTGATCTGCTTGACATTCCTTTGTATCATGGCTGGATTGTTGATCCTCAGGACAGTGATACAGCTAATGC TATTGCGTCAAAATCTTATAATTCTCTCATGGGGGACCTTGTTGCCTTGGAAACACAAAAGATGGAGGATGATAAAAGTAGAGACAATGTAGGAGATGAC TCTGTGGATTTTGCTGCTGCTACCGCTGCAGTCCTGGGTGTTCCTTCTCCTTCACTTTCAAGTAGATCTTTTGACTCTCCTCGTTCTGAGAGTGATGAGA GTAAGCTGATGAAAGGAGACCGGGAGGAAGAAGCTGAACTACAGAGAGCCTTGCGATTGTCCGAAACAGGACAGCAATCTGCAGATGGTCTTTATATTTT GACAGCTAATGCAAGTAATGAACTTATATCTTTCGATCAAGTTGAAGGTCCATCTTCCCAAGGAAGTCTTCCTGTGGCTGTTTCGGCGGAGAAAATTGTT ACCGATGATAGTAATGGTTCATCGAGTAACGGTAACTGTACGTCAACTGAGGAAATCTTATTTCGCCCCTTGCAAGCTGATCAAATTAACTACGTGCAAC AGTCTGTTTTTCCAGATCTTGGAGAATCTGAGTTGTCCAATACTGAGCCAGGTGTTGGTGTCCCTGGTGATGGTTTGAATCAGAAGAATGATATTAAGCC AAGTGTGGCAGAAGATGCGGCGCCTTTTTCTCCAAGAAAAATAGATATTCCTGTTTTGGAACACTCTGCAGATACATCACCCAGTGAGAAGGTTGAGAAT CAATTTGTTTCTGGACTTCACATCGATGGACAAACAGAGTTGAGTGGGCATGGCTCTGATGAAGTGTCACATGTATCGCCAACGAATCTTGGAACAGATT CATCAAATGGGTTAACGCAAAATGTGGATGTAAGCGAACCTTATTCCCCAAGCGTTGATGGTAGTGAACCCATATATGAGGGAGAAGAACGTATACAAGA TTCAGGAACTCCAAAATTTGAAGATGGAGAGCCTGTTTATGAGGGTGAGGTTATTCTGGCCGAGCAAGGTGATAAACCAGTCGGATCCAAGGATGGACTC TCTCCACAACAAGGGGAGCTAATAAGGAACTTCTTGAAGAACAGTGCCAGCCAGTTGACCTTTTATGGCCTTTTCTGCTTGCAAGAAGGGCTTAAAGAGC GTGAACTTTGTGTCTTTTTCCGGAATAACCACTTCAGCACCATGTTTAAGTTTAAAGGCGAGCTTTATCTCCTAGCTACTGATCAGGGTTATCTGAACCA GCATGATTTGGTGTGGGAGAAGCTAAATGAGGTCAATGGCGATACTTTGTTCATGACGTACAATTTCAGGGAATTCAAGGTGGAAAGCCCCAGAAATGAA ACTTGGGACGAGCAGAATGTCATGGCTAGTACCGCGGATTATCTCGCGGCCATCAACACGGCTTCCCAGGACAGTGACATAAACTCTGATCTCCAACTTG CAATCGCTCTGCAACAACAGGAATTCGAGCAGCAACAGTCCCAACGTAACAATCCGCAGCCGCCACCACCTTCCAGCGGAAACGAGCAGAGACTGATAAC TGGTCCTACGGTAATCATCTCCTGTACTTGCTTGCTCTTATTGCTTAATCCATTCCGATTATCGATTCTATCAACCTAA
AA sequence Show only first row Show all	>Lus10014145 pacid=23152913 polypeptide=Lus10014145 locus=Lus10014145.g ID=Lus10014145.BGIv1.0 annot-version=v1.0 MGVGNGFPGLCMGLMHLHIGCWTLMQVDRAWINDFEFTRECAIFDLLDIPLYHGWIVDPQDSDTANAIASKSYNSLMGDLVALETQKMEDDKSRDNVGDD SVDFAAATAAVLGVPSPSLSSRSFDSPRSESDESKLMKGDREEEAELQRALRLSETGQQSADGLYILTANASNELISFDQVEGPSSQGSLPVAVSAEKIV TDDSNGSSSNGNCTSTEEILFRPLQADQINYVQQSVFPDLGESELSNTEPGVGVPGDGLNQKNDIKPSVAEDAAPFSPRKIDIPVLEHSADTSPSEKVEN QFVSGLHIDGQTELSGHGSDEVSHVSPTNLGTDSSNGLTQNVDVSEPYSPSVDGSEPIYEGEERIQDSGTPKFEDGEPVYEGEVILAEQGDKPVGSKDGL SPQQGELIRNFLKNSASQLTFYGLFCLQEGLKERELCVFFRNNHFSTMFKFKGELYLLATDQGYLNQHDLVWEKLNEVNGDTLFMTYNFREFKVESPRNE TWDEQNVMASTADYLAAINTASQDSDINSDLQLAIALQQQEFEQQQSQRNNPQPPPPSSGNEQRLITGPTVIISCTCLLLLLNPFRLSILST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	0	1
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	2.0	0.8373
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	7.0	0.7478
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	7.9	0.8019
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	10.4	0.7580
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	11.2	0.7545
AT1G15780			unknown protein		Lus10025452 [exp]	11.7	0.7288
AT3G04470			Ankyrin repeat family protein ...		Lus10008195 [exp]	11.7	0.7007
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	20.5	0.7322
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	24.5	0.7183
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	26.8	0.7629

Compare expression of checked genes

Lus10014145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.