Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63000 530 / 0 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT1G78570 519 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 470 / 1e-163 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 461 / 5e-160 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT5G59290 47 / 9e-06 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 43 / 0.0002 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 42 / 0.0004 UXS6 UDP-XYL synthase 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006719 [exp] 617 / 0 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10005560 [exp] 505 / 6e-178 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 504 / 2e-177 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 501 / 1e-175 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 499 / 8e-175 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 472 / 2e-164 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 335 / 4e-111 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 321 / 1e-105 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10031389 [exp] 80 / 6e-19 AT1G78570 84 / 2e-20 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112000 [exp] 548 / 0 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.003G120000 [exp] 548 / 0 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G383500 [exp] 504 / 1e-176 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 502 / 3e-176 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 500 / 1e-175 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.008G053100 [exp] 44 / 0.0001 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 43 / 0.0002 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 42 / 0.0003 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Lus10014147 pacid=23152880 polypeptide=Lus10014147 locus=Lus10014147.g ID=Lus10014147.BGIv1.0 annot-version=v1.0 ATGGGTTTCCCGGCAAACGGCAAAGAATCCGGCCCGCTCAAGTTCCTCATCTACGGCCGTACAGGCTGGATAGGGGGGCTCCTGGGCAAAATCTGCGAGT CTCAGGGCATCGAGTACGTCTACGGCTCCGGCCGCCTCGAGAACCGCAGCTCCCTCGAGGAAGACATCGCCACCGTCAAGCCGACGCACGTCTTCAACGC TGCCGGCGTCACGGGGCGTCCCAACGTCGACTGGTGCGAGTCCCACAAGGTGGAGACCATCAGGACCAATGTCGTCGGAACTCTAACGCTGGCCGATGTC TGCCGGGAGAAAGGTCTGGTGATGGTTAATTACGCCACTGGCTGTATCTTCGAGTACGACGAGAAGCACCCGCTCGGGTCGGGAGTCGGGTTCAAGGAGG ACGATACTCCCAACTTCACCGGATCTTATTACTCCAAGACCAAGGCTATGGTGGAGGACCTGCTGAAGAACTACGAGAACGTCTGCACGCTGCGTGTTAG AATGCCGATCTCATCAGATTTGAGCAACCCACGTAACTTCATCACAAAGATCGCTAGGTACGACAAGGTGGTGAACATTCCGAACTCGATGACAATCTTG GACGAACTCCTCCCCATCTCGGTCGAGATGGCCAAGAGGAACCTCACTGGAATCTGGAACTTCACCAACCCTGGAGTGGTTAGTCACAACGAGATACTGG AGATGTACAGGGACTACATCAACCCCAACTTCACATGGAAGAACTTCAACCTCGAGGAGCAAGCCAAAGTGATAGTTGCGCCGAGGAGCAACAACGAGAT GGACGGTGCAAAACTGAAGAAGGAATTCCCTGAGCTGCTGTCGATAAAGGAGTCCCTCGTCAAGTACGTGTTCAAGCCCAACCAGAAGACTGCTGCTGCT TGA
AA sequence Show only first row Show all	>Lus10014147 pacid=23152880 polypeptide=Lus10014147 locus=Lus10014147.g ID=Lus10014147.BGIv1.0 annot-version=v1.0 MGFPANGKESGPLKFLIYGRTGWIGGLLGKICESQGIEYVYGSGRLENRSSLEEDIATVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADV CREKGLVMVNYATGCIFEYDEKHPLGSGVGFKEDDTPNFTGSYYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKIARYDKVVNIPNSMTIL DELLPISVEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYINPNFTWKNFNLEEQAKVIVAPRSNNEMDGAKLKKEFPELLSIKESLVKYVFKPNQKTAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	1.7	0.9552
					Lus10025731 [exp]	4.0	0.9325
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	4.2	0.9433
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	4.5	0.9448
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	6.3	0.9308
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	7.3	0.9495
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	7.5	0.9415
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	7.7	0.9226
AT3G49720			unknown protein		Lus10019279 [exp]	7.8	0.9043
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	8.7	0.9199

Compare expression of checked genes

Lus10014147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.