Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 926 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G25880 892 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT5G11670 879 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G19900 834 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT2G13560 387 / 2e-126 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 369 / 1e-119 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037561 [exp] 1246 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10025823 [exp] 1060 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10011125 [exp] 914 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10043025 [exp] 849 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 844 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10005484 [exp] 828 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 750 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10034963 [exp] 650 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 609 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G049300 [exp] 959 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 955 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G086700 [exp] 902 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 875 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 872 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.002G135300 [exp] 379 / 3e-123 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 374 / 3e-121 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 371 / 2e-120 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 366 / 1e-118 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10014149 pacid=23152898 polypeptide=Lus10014149 locus=Lus10014149.g ID=Lus10014149.BGIv1.0 annot-version=v1.0 ATGATCTCTCTCAGCCGAACCACTGTTCTGAACAAAGCGAGCATCTCAGGGTTTTCCAGCCCATTTCCGGATAGACGAAGAGGAGGAAGTTCGGCTAAGT TTCCATGTTCCTTGAAAGTGAAAGCTGCGGCTGCTGACGGGAACGGCACGGTTTTGGAGATCGATGCGGTCAAAGAGACGAAGACGACGATAACGGAAGC AGCTAGCTCTGTGATCGACGATTCTCAGCCCAATATTGCTGGCGGAATCCGCGATGTGTACGGTGAGGATACGGCCACCGAGGACCAGGCTGTAACTCCT TGGGCTCTTTCAGTAGCTAGTGGCTACTCCTTGTTGCGAGATCCTCGTCACAACAAAGGTCTTGCCTTTACGGATAAAGAGAGAGATGCCCATTATCTGC TTGGTCTTCTCCCTCCATCAGTTCCTTCTCAGGATCTTCAGGTGAAGAAACTGATGCACATTATTCGTCAGTATCAAGTGCCGCTTCAGAAGTACATGTA TATGATGGATCTCCAGGAGAGAAACGAGCGCCTGTTCTACAAACTACTTATCGAGAATGTCGAGGAGATGCTTCCCATTGTGTACACTCCAACTGTCGGA GAGGCTTGTCAGAAATACGGTAGCATCTTTAGCCGTCCTCAGGGTCTTTACATCAGCTTGAAGGAGAAGGGAAGGATCCTCGAGGTTTTGAGGAACTGGC CTGAAAAAAATATTCAAGTTATTGTTGTTACTGATGGCCAAAGGATTTTGGGGCTTGGAGACCTTGGATGCCAGTGCTTGCCTATCACTATCGATGTCGG TACAAACAACGAGGCGTTGCTAAATGATGAGTTCTACATTGGCCTTAGGCAAAGAAGGGCAACTGGACAGGAATATGCTGAATTACTTCATGAATTCATG ACGGCAGTGAAGCAGACTTATGGCGAGAGAGTCCTCGTTCAGTTCGAAGACTTTGCAAATCACAATGCGTTTGATCTGCTTGCAAGATATGGAACTACAC ATCTCGTATTCAACGACGACATTCAGGGCACAGCTTCGGTGGTCCTTTCTGGGCTTATGGCAGCTCTGAAAGTATTAGGTGGAACGTTGGCTGAACACAG ATTCCTATTTTTGGGCGCAGGAGAGGCTGGCACTGGCATTGCAAATTTGATTGCCCTCGAGATTTCCAAACAGACGAAAATGCCACTAGAAGAGGCTCGG AAAAATATCTGGCTGGTGGACTCAAAGGGTCTGATTGTTGAATCCCGCAAGGAGTCGCTGCAACACTTCAAGAAACCATGGGCTCATGAGCACAAACCTA TCGAAACTCTTCTAGAAGCTGTGAATGATATAAAGCCGACAGTGTTGATTGGTACGTCAGGAGTAGGACAAACGTTCACACAAGATGTGGTCGAGGCCAT GGCCACCTTCAACGAGGCAAGTCCTCCGATTTTATCGTGGCTTATTTTCTTCCTTCTGCAAAAACCTCTAATTCTTGCACTCTCCAATCCAACTTCACAG TCTGAGTGCACTGCTGAACAAGCATATACATGGACTAAGGGTCGTGCTATTTACGCTAGTGGAAGTCCGTTCCCGCCAGTTGAATTCGAGGGTCAAACAT ATGTGCCTGGCCAGGCAAACAATGCATACATTTTCCCTGGTCTAGGTCTAGGCTTAATCATGTCCGGAACCATCCGTGTCCACGACGATATGCTTCTTGC AGCCTCCGAAGCGTTGGCTGCTCAGGTGACTCAAGAGAACTTGGACAACGGACTTGTATACCCACCTTTCACAAACATCAGGAAGATTTCAGCTCAAATT GCTGCGAGTGTTGCTGCCAAGGCTTACGAACTCGGTTTGGCAACGCGTCTCCCGCGACCCAAGGATCTAGTGCAGTATGCTGAGAGCTGTATGTACAGCC CAGCTTACAGACATTACAGGTGA
AA sequence Show only first row Show all	>Lus10014149 pacid=23152898 polypeptide=Lus10014149 locus=Lus10014149.g ID=Lus10014149.BGIv1.0 annot-version=v1.0 MISLSRTTVLNKASISGFSSPFPDRRRGGSSAKFPCSLKVKAAAADGNGTVLEIDAVKETKTTITEAASSVIDDSQPNIAGGIRDVYGEDTATEDQAVTP WALSVASGYSLLRDPRHNKGLAFTDKERDAHYLLGLLPPSVPSQDLQVKKLMHIIRQYQVPLQKYMYMMDLQERNERLFYKLLIENVEEMLPIVYTPTVG EACQKYGSIFSRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGQRILGLGDLGCQCLPITIDVGTNNEALLNDEFYIGLRQRRATGQEYAELLHEFM TAVKQTYGERVLVQFEDFANHNAFDLLARYGTTHLVFNDDIQGTASVVLSGLMAALKVLGGTLAEHRFLFLGAGEAGTGIANLIALEISKQTKMPLEEAR KNIWLVDSKGLIVESRKESLQHFKKPWAHEHKPIETLLEAVNDIKPTVLIGTSGVGQTFTQDVVEAMATFNEASPPILSWLIFFLLQKPLILALSNPTSQ SECTAEQAYTWTKGRAIYASGSPFPPVEFEGQTYVPGQANNAYIFPGLGLGLIMSGTIRVHDDMLLAASEALAAQVTQENLDNGLVYPPFTNIRKISAQI AASVAAKAYELGLATRLPRPKDLVQYAESCMYSPAYRHYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	0	1
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	1.0	0.9387
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	1.4	0.9221
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	3.2	0.9042
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	4.2	0.9139
AT3G19080			SWIB complex BAF60b domain-con...		Lus10019640 [exp]	8.8	0.8482
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	8.9	0.8947
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10035014 [exp]	9.3	0.8441
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	9.8	0.9065
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	10.4	0.9036
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	10.4	0.8698

Compare expression of checked genes

Lus10014149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.