Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59870 2173 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 2149 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 2103 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G66950 1673 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1672 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 1661 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G29940 1586 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT2G26910 1579 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G53480 1533 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1503 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037562 [exp] 2842 / 0 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10025824 [exp] 2635 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10008090 [exp] 1651 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1644 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1636 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1621 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1581 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10008984 [exp] 1578 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10034020 [exp] 1561 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189500 [exp] 2346 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.003G049600 [exp] 2267 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.006G115000 [exp] 1713 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.001G048900 [exp] 1712 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1709 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1707 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1705 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1697 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1696 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.008G024400 [exp] 1696 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10014150 pacid=23152863 polypeptide=Lus10014150 locus=Lus10014150.g ID=Lus10014150.BGIv1.0 annot-version=v1.0 ATGGAGGAGGTTTTCGCCGGCGGGAACTCTCGCCGGAGCAGTACCCACGGCGACGAGGACGAGGAGGCCCTGAAATGGGCTGCGATCGAGCGGCTCCCGA CTTACGACCGGCTGAGGACCACCATCATGAAATCGGTGATGGAGGATAACAACGCCGAGGGGATGTTCCGTGGCCATAAGCAAGTCGACGTGGCCAGGCT TGGCGACGGCGACCGCCAGCAGTTCATCGACCAGATCTTTAAGGTCGCTGAGGAAGACAACGAGAAGTTCTTGAAGAAGTTCAGAGAGCGGATTGACAAG GTGGGAATTCAACTGCCGACGGTGGAAGTGAGGTTCGAGCACTTGACGATAGAGGCGGATTGCTACATCGGCGACCGAGCTTTGCCGACGTTACCAAACG TGGCTAGGAACATAGTAGAATCGGGGCTTGACAAGATCGGGATTCATTTGGCTAAGAGAACCAAGCTCACCATCCTCAAAGATGTTTCAGGAATCATCAA ACCTTCCAGGATGGCCTTGTTGTTAGGTCCACCTTCATCAGGGAAGACAAGTCTTCTTCTAGCAATGGCCGGAAAATTGGACCCGAATCTCAAGGTCAAA GGAAGCATAACCTACAACGGTCACACGATGAAAGAATTCGTTCCTAGAAAAACGTCCGCGTACATTAGCCAGAACGACGTTCATGTTGCTGAGATGACTG TGAAAGAGACGCTCGATTTCTCCGCTAGGTGCTTAGGTGTCGGCACGCGATATGATCTTCTGAGTGAATTGGGAAGAAGAGAAAAGGAAGCTGGAATCTT CCCTGAAGCAGAAGTTGACCTTTTCATGAAGGCAACCGCGATGAAAGGGGCTGAAAGCACTCTCAACACAGATTATACTCTAAAAATTCTTGGGCTTGAT ATATGCAAGGACACAATTGTAGGAGATGATATGATTAGAGGAATCTCTGGTGGTCAGAAGAAAAGAGTTACTACAGGGGAGATGATCGTGGGGCCGACGA AAACCCTGTTCATGGACGAGATATCAACGGGTCTAGACAGCTCCACAACGTACCAAATTGTTAAGTGCCTGCAGCAGATCGCGCACCTCACTGACGCCAC CATCTTAATGTCCCTGCTCCAGCCTGCTCCCGAGACGTTCGATCTGTTCGATGACATAATCCTTTTATCCGAGGGCCAGGTAGTGTACCAGGGCCCGCGG GAAAGCATCCTCGAATTCTTTGCTAGTTGTGGTTTCCGCTGTCCAGAACGTAAGGGAACCGCTGATTTTTTGCAAGAGGTGACATCAAGGAAAGACCAAG AGCAATATTGGGCACACAGGGACAGGCCATACGAATACGTGTCGGTCACCGATTTGGTCACGAGATTCAAGACATTCCACGTAGGAATGCATCAGGACAA CGACCTATCGGTCCCATTCAACAAGTCACTAGGCCACAAGGCAGCATTAGTGTACAAGAAGTACACTGTCCCAAAACTGGACCTACTCAAGGCCAGTTGG GATAAAGAGTGGCTACTCATGAAGAGGAACTCGGTCGTCTACGTGTCGAAGACCATCCAGATGATCGTGGTTGCTTTAATAGCCTCCACCGTGTTCCTAA GGACTAGGATGCACCAGCGTAACGAGGACGATGGTGCTGCCTACATCGGTGCACTAATATTCGCGATGATCCACAATATGTTCAACGGGTTTGCTGAGCT GTCATTGATGATCAAGAGGCTCCCTGTGTTCTACAAGCAGAGGGATTTGTTGTTTCAGCCTGCTTGGACTTTTACTTTGCCTACATTCTTGCTTGGAGTC CCGTCCTCGATCTTGGAGTCCACGGTGTGGATGGTTGTGACTTACTACACCGTTGGTTATGCTCCGGAAGCGAGCAGGTTCTTCAAGCAGTTTCTTGTGG TGTTCTTGATCCAGCAGATGGCTGCTGGTTGCTTTAGGCTCATTGCTGGTGTTTGCAAGACTTTCATCATTGCCAACACCGGCGGAGCTCTCACCCTTCT TCTCATTTTCTTGCTTGGTGGCTTCATCTTGCCAAAAGGACAAATCCCAGTATGGTGGGAATGGGCTTACTGGGTATCCCCATTGTCATATGGTTACAAT GCAATGGCAGTCAATGAAATGACTGCTCCAAGGTGGATGAACAGACTGGCATCAGACAACTCCACTAGCTTGGGTATACAAGTGCTCCGAAATTTCGATA TCCCCACCGATAAGAACTGGTACTGGATTGGTGTGGCAGCTCTTCTCGGATTTGCAGTCGTGTTCAATGTCCTCTTCACACTCTCCTTGATGTACTTTGC TCCTCCTGGGAAGCCACAAGCAGTGATTTCGGAGGAAGAAGCCAAGGACATGGAAGGCGATTCGAAGCGTACTCCAAGGCTTTCGAGGTTGGAATCGAAC AAGGATGAAGCTCCTAGAGTATCATTGTCTCCTGCAGATGGAAACAACTCAAGAGAGATGGGAGCTATGAGAATGAGTAGCCATAGCAATCCGAATGGAA CATTCGATGCAGAATCAGGTGGTGTTGCTGCCAAGAGAGGGATGGTTCTTCCTTTCACTCCTTTAGCCATGTCTTTCGACAGTGTCAACTACTATGTTGA CATGCCACCGGAAATGAAGGAGCAAGGAGTTGCAGAGGATAGGCTACAGTTGCTCCGCGAAGTGACAAGCTCGTTCCGGCCTGGAGTGCTGACAGCATTG ATGGGAGTGAGTGGAGCTGGAAAGACAACTCTGATGGATGTTCTAGCAGGAAGAAAGACCGGTGGTTACATCGAAGGAGATATCAGAATCTCGGGGTACC CCAAGAACCAAGAAACTTTCGCAAGAATCGCAGGATACTGCGAGCAGACCGATATCCATTCTCCTCAAGTCACTGTTAGGGAGTCGTTGATCTTCTCAGC TTTCCTCAGGCTGCCTAAAGATGTCGACAAAGACGAAAAGATGAAATTTGTTGACCAAGTAATGGAGCTTGTGGAGCTGGACAACTTGAAAGATGCAGTA GTTGGACTTCCAGGAGTGACTGGTTTGTCAACAGAGCAAAGAAAAAGGTTGACTATTGCAGTGGAGCTTGTTGCCAACCCTTCAATCATTTTCATGGACG AACCGACATCCGGCCTCGATGCAAGAGCTGCAGCTATTGTCATGAGAACTGTTAGGAACACCGTCGATACAGGAAGAACAGTTGTCTGCACCATTCATCA GCCTAGCATCGACATATTCGAAGCTTTCGACGAGTTGCTTCTCATGAAGAGAGGAGGACAGGTTATCTATGCTGGACCGTTGGGGCGAAACTCGCACAAG ATCGTTGAGTATTTCGAGTCAATTCCTGGTGTCCCTAAAATCAAAGAGAAGTACAATCCTGCAACATGGATGCTTGAAGTGAGCTCAATTGCTGCTGAGG TTCGCCTCGGAATTGATTTCGCTGAACATTACAAGCAGTCAGCATTGAACCAGAGAAACAAGACAATAGTGAAGGATTTGAGCACGCCACCAACCGGATC TAAAGATCTATACTTTGCAACAAAATTCTCTCAAGCGACTTGGGGACAATTCAAATCTTGTCTGTGGAAACAATGGTGGACATATTGGAGAAGTCCTGAC TATAACTTGGTCAGATTCTTCTTCACATTGGCGGCTGCACTTATGGTCGGGACGATCTTCTGGAAAGTCGGGACCAAAAGGGATAGCAGCAGTGATCTCA CCATGGTCATTGGAGCTATGTACGCTGCTGTGTTGTTCATAGGAATCAACAATTGCTCGTCGGTGCAGCCAATTGTAGCGGTCGAGAGGACTGTGTTCTA TCGCGAAAGAGCAGCAGGAATGTACTCGGAATTGCCTTACGCACTCTCGCAAGTCATAGCTGAGATTCCATATGTGTTGGTTCAGACGACGTACTATACA TTGATAGTGTATGCTATGATGGCATTCCAATGGACAGCTGCAAAGTTCTTCTGGTTCTACTTCATCAGCTTTTTCTCATTCCTCTACTTCACTTACTATG GCATGATGACTGTCTCGGTCACTCCGAATCACCAAGTGGCGGCCATTTTCGCTGCAACGTTCTACGCTCTGTTCAATCTCTTCTCCGGGTTCTTCATCCC TAGGCCGAGGATTCCAAAGTGGTGGGTATGGTACTACTGGATCTGCCCCGTGGCATGGACAGTTTACGGGCTGATCTTGTCGCAGTACGGGGATGTAGAG GACACGATTCGGGTTCCGGGAGTGTCTCCTGACCCGACGATCAAGTGGTATGTGGAGAACCACTTTGGTTACAACCCGAACTTCATGGCTCCTGTTGCCA TAGTGCTGGTTGCCTTCACTTCCTTCTTTGCATTTGTGTATGCTTACTGCATCAAGACACTCAACTTCCAGACAAGGTAA
AA sequence Show only first row Show all	>Lus10014150 pacid=23152863 polypeptide=Lus10014150 locus=Lus10014150.g ID=Lus10014150.BGIv1.0 annot-version=v1.0 MEEVFAGGNSRRSSTHGDEDEEALKWAAIERLPTYDRLRTTIMKSVMEDNNAEGMFRGHKQVDVARLGDGDRQQFIDQIFKVAEEDNEKFLKKFRERIDK VGIQLPTVEVRFEHLTIEADCYIGDRALPTLPNVARNIVESGLDKIGIHLAKRTKLTILKDVSGIIKPSRMALLLGPPSSGKTSLLLAMAGKLDPNLKVK GSITYNGHTMKEFVPRKTSAYISQNDVHVAEMTVKETLDFSARCLGVGTRYDLLSELGRREKEAGIFPEAEVDLFMKATAMKGAESTLNTDYTLKILGLD ICKDTIVGDDMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIAHLTDATILMSLLQPAPETFDLFDDIILLSEGQVVYQGPR ESILEFFASCGFRCPERKGTADFLQEVTSRKDQEQYWAHRDRPYEYVSVTDLVTRFKTFHVGMHQDNDLSVPFNKSLGHKAALVYKKYTVPKLDLLKASW DKEWLLMKRNSVVYVSKTIQMIVVALIASTVFLRTRMHQRNEDDGAAYIGALIFAMIHNMFNGFAELSLMIKRLPVFYKQRDLLFQPAWTFTLPTFLLGV PSSILESTVWMVVTYYTVGYAPEASRFFKQFLVVFLIQQMAAGCFRLIAGVCKTFIIANTGGALTLLLIFLLGGFILPKGQIPVWWEWAYWVSPLSYGYN AMAVNEMTAPRWMNRLASDNSTSLGIQVLRNFDIPTDKNWYWIGVAALLGFAVVFNVLFTLSLMYFAPPGKPQAVISEEEAKDMEGDSKRTPRLSRLESN KDEAPRVSLSPADGNNSREMGAMRMSSHSNPNGTFDAESGGVAAKRGMVLPFTPLAMSFDSVNYYVDMPPEMKEQGVAEDRLQLLREVTSSFRPGVLTAL MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARIAGYCEQTDIHSPQVTVRESLIFSAFLRLPKDVDKDEKMKFVDQVMELVELDNLKDAV VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRNSHK IVEYFESIPGVPKIKEKYNPATWMLEVSSIAAEVRLGIDFAEHYKQSALNQRNKTIVKDLSTPPTGSKDLYFATKFSQATWGQFKSCLWKQWWTYWRSPD YNLVRFFFTLAAALMVGTIFWKVGTKRDSSSDLTMVIGAMYAAVLFIGINNCSSVQPIVAVERTVFYRERAAGMYSELPYALSQVIAEIPYVLVQTTYYT LIVYAMMAFQWTAAKFFWFYFISFFSFLYFTYYGMMTVSVTPNHQVAAIFAATFYALFNLFSGFFIPRPRIPKWWVWYYWICPVAWTVYGLILSQYGDVE DTIRVPGVSPDPTIKWYVENHFGYNPNFMAPVAIVLVAFTSFFAFVYAYCIKTLNFQTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10014150 [exp]	0	1
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	5.5	0.8386
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	7.7	0.8200
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	12.1	0.8434
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	13.0	0.8197
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	17.6	0.8381
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	21.5	0.8141
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	33.7	0.8044
AT5G16110			unknown protein		Lus10028474 [exp]	37.3	0.8185
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	48.5	0.8104
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	49.2	0.7830

Compare expression of checked genes

Lus10014150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.