Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 972 / 0 Protein kinase family protein (.1.2) AT3G13670 927 / 0 Protein kinase family protein (.1) AT3G03940 905 / 0 Protein kinase family protein (.1) AT5G18190 905 / 0 Protein kinase family protein (.1) AT3G03930 350 / 2e-116 protein kinase-related (.1) AT4G26100 203 / 3e-58 CKL1, CK1 casein kinase 1 (.1) AT5G57015 199 / 5e-57 CKL12 casein kinase I-like 12 (.1) AT1G72710 200 / 6e-57 CKL2 casein kinase 1-like protein 2 (.1) AT2G19470 198 / 1e-56 CKL5 casein kinase I-like 5 (.1) AT1G03930 196 / 3e-55 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037565 [exp] 1243 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 1047 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10005479 [exp] 969 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 942 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 940 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 900 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 857 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 847 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 838 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046400 [exp] 1002 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 991 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 955 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.001G009700 [exp] 941 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G049700 [exp] 936 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 935 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 920 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.018G065900 [exp] 210 / 1e-60 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 210 / 2e-60 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 207 / 2e-59 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014152 pacid=23152946 polypeptide=Lus10014152 locus=Lus10014152.g ID=Lus10014152.BGIv1.0 annot-version=v1.0 ATGCCGGTTCTGCGTAGCGGAATGCGCAGGGGCCGGAGAGGAGCAGCAACACCAGCTGATCACCAGCAGCCGCCGATTCCTGTCCAGACAGGAGAAGCGA TTGCGACGAGAACTCGCCGGAGGCGTGCGGCGGCGGCTGTAAACGACTTGACTAATAATCAGGCTGCGGCTCAGGCGCCTGTAGTGGCGGCGGCGGAGGC TGCGGAGGAGAACAGACATAGGCAAGAGGAAGAGGAAAATAGAATGGCTGACTGTGGGATTGGTGTTGGGAGAAGCAACGACAAGGGAAATGCTGCCGAT GATGAAGGGAGCGCAAACCCCATTCCAGAGAAGGTTCAGGTTGGAGGTTCACCATTGTACAGAGTAGAAAATAAGTTGGGCAAAGGAGGTTTTGGTCAAG TATATCTTGGTCGACGTGTTAGTGGTGGCCCAGGGCCTCTAGAGGTGGCATTAAAATTTGAGCATAAAAACAGTAAAGGATGTAATGGAGGACCGCCTCA AGAGTGGCAGCTTTACAGCAATCTTGGGAGCTGTCATGGTGTCCCTCAAGTTCACTTCAAGGGACTGCACAGTGACTATTATATTATGGTTATGGACATC CTTGGGCCAAGCTTGTGGGATGTTTGGAATAATAATGCTCAGACGATGGCCGTTGATTTGGTTGCATGTATAACCATTGAAGCAATATCCATATTGGAGA AGGTGCACTCTAAAGGGTATGTCCATGGAGATATAAAGCCTGAAAATTTCCTGCTTGGTCAACCTGGAACTCATGAAGCGAAGAAGCTGTTTCTTGTCGA CCTTGGATTAGCCACTAGATGGCGAGACAGGTCTACTGGTCAGCATGTTGAGTATGATCAAAGGCCAGACATCTTCAGAGGAACAGTGCGGTATGCTAGC GCCCATGCGCATTTGGGGAGAACTGCAAGTCGGAGAGATGATCTAGAGTCTCTGGCTTACACATTGGTTTTCCTTCTCCGTGGTCGATTGCCTTGGCAAG GTTTCCAGGGGGACAATAAAGGTTTTCTTGTATTGAAGAAAAAGATGGCCACATCCCCAGAAGCACTGTGCTGCTTTTGCCCGTTGCCTTTCAAAAATTT TGTTGAATACGTGGTGAATCTTAAGTTCGATGAGGAACCCGACTATGCAAAATGCATTTCGTTCTTTGATGAAATCGTTGGTCGAAATCCAAATGTGCGA CCAATTTACACAGATGGTGCTCAGAAGCTTATTTGTCAAGTTGGCCGAAAAAGAGGACGGTTAACCATGGAGGATAATGGGGATGAACAGCCTAGAAAGA AGATTAGGACGGGAATGCCAGCATGTCAATGGATCAGCATATACAGTGCTCGCCGGCCCATGAAGCAGAGGTATCATTATAATGTCGGCGAGTCGAGACT GGCTCATCATATCGAAAAAGGAAATGAAGATGGATTATTTATTAGTAGCGTTTCGTCAGCTCAAAACTTATGGGCACTTATCATGGATGCTGGTACCGGG TTTGTGGAACAAGTCTATGACCTCTCACCCAATTTTCTAAACAAGGATTGGATAATGGAACAATGGGAGAAGGGCTATTACATCAACGCCTTAGCTGGAG CTACCAATGGAAACTCATTAGTAGTGATGTCCAAGGGTACATCATATCAGCAACAGTCATATAAAGTGACTGAAACCTTCCCTTCCAAATGGATCAGCAG AAAATGGAAGGAGGGATTCCATGTCACCTCAATGGCTACCTCGGGGAGCAAATGGGCAATCGTCGTGTCTCGAGGAGCTGGGTTTACTCATCAGGTTGTG GAGCTTGATCTTCTGTACCCGAGCGAAGGGATCCACCGACGATGGGAGAAAGGGTATCGTATCACATCGACTGCAGCAACCTATGACCAGGCTGCATTTG TCCTCAGTATACCTCGAAGAAAGCCGCAAGACGAAACCCAGGAGACGCTTCGAACCTCTACATTCCCGAGTGATCATGTCAAGGAGAAATGGGCGAAGAG TCTGTACATTTCATCGATATGTTTCGGACGAACAGTATCTTGA
AA sequence Show only first row Show all	>Lus10014152 pacid=23152946 polypeptide=Lus10014152 locus=Lus10014152.g ID=Lus10014152.BGIv1.0 annot-version=v1.0 MPVLRSGMRRGRRGAATPADHQQPPIPVQTGEAIATRTRRRRAAAAVNDLTNNQAAAQAPVVAAAEAAEENRHRQEEEENRMADCGIGVGRSNDKGNAAD DEGSANPIPEKVQVGGSPLYRVENKLGKGGFGQVYLGRRVSGGPGPLEVALKFEHKNSKGCNGGPPQEWQLYSNLGSCHGVPQVHFKGLHSDYYIMVMDI LGPSLWDVWNNNAQTMAVDLVACITIEAISILEKVHSKGYVHGDIKPENFLLGQPGTHEAKKLFLVDLGLATRWRDRSTGQHVEYDQRPDIFRGTVRYAS AHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGFQGDNKGFLVLKKKMATSPEALCCFCPLPFKNFVEYVVNLKFDEEPDYAKCISFFDEIVGRNPNVR PIYTDGAQKLICQVGRKRGRLTMEDNGDEQPRKKIRTGMPACQWISIYSARRPMKQRYHYNVGESRLAHHIEKGNEDGLFISSVSSAQNLWALIMDAGTG FVEQVYDLSPNFLNKDWIMEQWEKGYYINALAGATNGNSLVVMSKGTSYQQQSYKVTETFPSKWISRKWKEGFHVTSMATSGSKWAIVVSRGAGFTHQVV ELDLLYPSEGIHRRWEKGYRITSTAATYDQAAFVLSIPRRKPQDETQETLRTSTFPSDHVKEKWAKSLYISSICFGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25760			Protein kinase family protein ...		Lus10014152 [exp]	0	1
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	2.4	0.7849
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	2.8	0.7804
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	3.0	0.8001
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	16.9	0.7297
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	17.7	0.7570
AT2G46320			Mitochondrial substrate carrie...		Lus10012635 [exp]	17.9	0.6987
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	21.0	0.7342
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	21.6	0.7808
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	23.7	0.7443
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	25.5	0.7428

Compare expression of checked genes

Lus10014152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.