Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29110 72 / 7e-16 unknown protein AT3G16330 70 / 5e-15 unknown protein AT1G52140 53 / 9e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037566 [exp] 265 / 6e-92 AT1G52140 79 / 2e-18 unknown protein Lus10025828 [exp] 157 / 7e-49 AT1G52140 138 / 8e-41 unknown protein Lus10038274 [exp] 154 / 1e-47 AT3G16330 124 / 2e-35 unknown protein Lus10012967 [exp] 57 / 1e-10 AT1G52140 105 / 5e-29 unknown protein Lus10034944 [exp] 57 / 2e-10 AT1G52140 100 / 3e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188900 [exp] 112 / 3e-31 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 105 / 8e-29 AT1G52140 129 / 1e-37 unknown protein Potri.018G086500 [exp] 66 / 2e-13 AT4G29110 139 / 3e-41 unknown protein Potri.014G139900 [exp] 50 / 1e-07 AT1G52140 87 / 3e-21 unknown protein Potri.018G046500 [exp] 47 / 8e-07 AT1G52140 94 / 1e-23 unknown protein Potri.006G236700 [exp] 45 / 4e-06 AT4G32860 94 / 4e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014153 pacid=23152919 polypeptide=Lus10014153 locus=Lus10014153.g ID=Lus10014153.BGIv1.0 annot-version=v1.0 ATGGAGCAATCCCTACCGTTAATCGCGAAGAAAGCATGGGGGATGGTACGTGTCCTTATCTTCATGGTACGTAGATCCATCATCTCCAAGAGAAAGCTCC TCCTCCTCGACCTCAACATGGCCATCAAACGTGGCAACAAAATCGCCTCCAAGGCCATCGGCAACCTCAAGTTCCACCACCACCACAACCACCGTGCCCC CTCCGTCACCGACGTGGAAGAAGCCGCTGCGGCCGAGGAGGCTGTGAAGATGGCGTTGGAGATGGTGAACGCCACATGCGACGTCGGTGGTGATGACGGT GGTGGTGGGGTGAATGTGTACGCGGCGACGCCGTCTCCGGTGGTGCTGCCCCGACGGCGGAAGGGTGTTACAAGGAGTTTGAGGATAACGGACTCGCCGT TTCCGTTAAGGGAGGATGACGGAGGAGATAACGGCGTTGTGGACAGGAAAGCGGATGAGTTCATTGCTAATTTCTACAGGCAGCTTCAACAGCAGCAGTA G
AA sequence Show only first row Show all	>Lus10014153 pacid=23152919 polypeptide=Lus10014153 locus=Lus10014153.g ID=Lus10014153.BGIv1.0 annot-version=v1.0 MEQSLPLIAKKAWGMVRVLIFMVRRSIISKRKLLLLDLNMAIKRGNKIASKAIGNLKFHHHHNHRAPSVTDVEEAAAAEEAVKMALEMVNATCDVGGDDG GGGVNVYAATPSPVVLPRRRKGVTRSLRITDSPFPLREDDGGDNGVVDRKADEFIANFYRQLQQQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29110			unknown protein		Lus10014153 [exp]	0	1
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	1.4	0.9331
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	1.7	0.9003
					Lus10023424 [exp]	2.0	0.8943
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	3.5	0.9054
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	4.7	0.8779
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	5.1	0.8755
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	6.5	0.8825
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	7.1	0.8784
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	8.1	0.8842
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	8.1	0.8891

Compare expression of checked genes

Lus10014153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.