Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 172 / 3e-54 Protein of unknown function (DUF567) (.1) AT2G14560 170 / 4e-53 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 164 / 9e-51 Protein of unknown function (DUF567) (.1) AT3G16900 124 / 2e-35 Protein of unknown function (DUF567) (.1) AT3G56180 107 / 6e-29 Protein of unknown function (DUF567) (.1) AT3G10986 91 / 1e-22 Protein of unknown function (DUF567) (.1) AT3G15810 91 / 3e-22 Protein of unknown function (DUF567) (.1) AT1G80120 78 / 1e-17 Protein of unknown function (DUF567) (.1) AT2G38640 65 / 8e-13 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022754 [exp] 422 / 2e-152 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 273 / 1e-93 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 273 / 1e-93 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 268 / 1e-91 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 225 / 6e-75 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 204 / 2e-66 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 200 / 7e-65 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 196 / 2e-63 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 181 / 2e-57 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130700 [exp] 259 / 2e-88 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 259 / 2e-88 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 258 / 6e-88 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 241 / 3e-81 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 237 / 1e-79 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 196 / 3e-63 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 191 / 2e-61 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 186 / 2e-59 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 184 / 8e-59 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 171 / 9e-54 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10014154 pacid=23152884 polypeptide=Lus10014154 locus=Lus10014154.g ID=Lus10014154.BGIv1.0 annot-version=v1.0 ATGAGGGCAGGGTGCGACGTCGTAGTAATGCCGACCGAGGAGGATCCCGACCAGCCGTTGGTTAACCCGGTGGTGGTGGTCGGACCGCGGTACTTGGCCG ATTATCCTATCGACCTCACGGTTGCCTCCAAGACCCTTACCCTCGGGGAGAACGACTTCACCATCAACGACATCAATGGGACACTTATTTTCAACGTCAA GAGCAAGTTGTTGAGCCTTCATGATCGCCGGAGGATGCACGATTCCGCCGGTAACGTCGTCCTTTCCCTCCAACAAAAGATATTGAGTGCCCACAGGAGA TGGCAAGCCTTCAAAGGAGATAGCACAGAGTACAAAGATCTAATCTTCAGTGTGAGGAAATCGTCCATCCTGAAATATAACGGTAAGTTAGATGTGTTCT TGGCCGAGAACAAGAAGGAAGAATCGCCTGATTTCAGGATCAAAGGTGGCTGGGCTGAGGGTTCTTGCACCGTTTACCTAGGCAAATCCAAAACCATCAT TGCCAAGATGCAAAGGGGGCAGCAGAGTCTGAAAGTGGTATTCCTTGACGCAGACACTTTCAAAGTGACCGTGTATCCACAAGTTGATTATGCCTTCATT GTTGCACTTGTACTTATTCTCGATGAGATCAATGCTGATCGTAGTGGCGATGACTAG
AA sequence Show only first row Show all	>Lus10014154 pacid=23152884 polypeptide=Lus10014154 locus=Lus10014154.g ID=Lus10014154.BGIv1.0 annot-version=v1.0 MRAGCDVVVMPTEEDPDQPLVNPVVVVGPRYLADYPIDLTVASKTLTLGENDFTINDINGTLIFNVKSKLLSLHDRRRMHDSAGNVVLSLQQKILSAHRR WQAFKGDSTEYKDLIFSVRKSSILKYNGKLDVFLAENKKEESPDFRIKGGWAEGSCTVYLGKSKTIIAKMQRGQQSLKVVFLDADTFKVTVYPQVDYAFI VALVLILDEINADRSGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	1.7	0.8000
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	3.5	0.7563
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	4.6	0.7307
AT4G21020			Late embryogenesis abundant pr...		Lus10015427 [exp]	6.0	0.7192
AT5G51490			Plant invertase/pectin methyle...		Lus10027203 [exp]	9.5	0.7376
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	10.4	0.7417
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	12.3	0.7196
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	14.3	0.7332
					Lus10032779 [exp]	15.9	0.6684
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	18.1	0.7453

Compare expression of checked genes

Lus10014154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.