Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38410 379 / 7e-123 ENTH/VHS/GAT family protein (.1) AT5G01760 340 / 1e-109 ENTH/VHS/GAT family protein (.1) AT4G32760 265 / 2e-79 ENTH/VHS/GAT family protein (.1.2) AT1G76970 229 / 4e-68 Target of Myb protein 1 (.1) AT3G08790 231 / 2e-67 ENTH/VHS/GAT family protein (.1) AT1G21380 229 / 2e-67 Target of Myb protein 1 (.1) AT5G63640 152 / 3e-40 ENTH/VHS/GAT family protein (.1) AT5G16880 115 / 1e-27 Target of Myb protein 1 (.1.2.3) AT1G06210 84 / 3e-17 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022753 [exp] 845 / 0 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 506 / 9e-172 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 256 / 1e-75 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10028649 [exp] 233 / 7e-67 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10029739 [exp] 226 / 2e-66 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10018948 [exp] 222 / 9e-66 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10042770 [exp] 219 / 5e-64 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10009082 [exp] 184 / 6e-49 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10022667 [exp] 170 / 2e-46 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131900 [exp] 491 / 8e-166 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 487 / 4e-165 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.006G241000 [exp] 261 / 3e-78 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 258 / 6e-77 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 242 / 3e-72 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 237 / 2e-70 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.T010700 [exp] 151 / 5e-40 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 151 / 5e-40 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 149 / 4e-39 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 122 / 7e-30 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10014155 pacid=23152937 polypeptide=Lus10014155 locus=Lus10014155.g ID=Lus10014155.BGIv1.0 annot-version=v1.0 ATGGCTATGGCGATGGCTTCATCGTCTTCCGCTACGGTGGCGGTGGACAAGGCCACCAGCGACCTCCTCATCACGCCTGACTGGACCATGAACATCGACA TCTGCGATTCCATCAACTCCAATCACTGGCTGGCGAAAGATGTAGTGAAAGCGGTGAAGAAGCGATTGCAGCATAAGAACCCCAGAGTTCAGTTTCTTGC TTTGACGTTGTTGGAGACGATGGTGAAGAATTGTGGCGATTTCGTCCATTTCCAGATTGCGGAGAAGAATATCTTGGGTGAGATGGTTAAGACCGTGAAG AAAAAGACAGATGTGCAAGTGAGGGACAAAGTCCTGGTTCTTCTAGACTCTTGGCAAGAAGCTTTTGGTGGGCCTGGAGGAAAATATCCTCAATACTACT GGTCTTACGAAGAGTTGCGGCGTTCTGGAGTGCCGTTTCCCCCTCGTGCTTTGAATGCTGCTCCAATATTTACTCCACCACTAACCCATTCGACATTGAG ACTTGCTGAACCTGGATATGGAATGCCGGGAGGTTCTTCTAGAAGACTTGATGAAACCATGGCTACTGAGATTGAAGGGTTAAGTTTGTCAAGCCTAGAA TCCATGCGCAATGTGATGGAGCTCTTGGGTGACATGTTACAAGCTGTTAGCCCCGGTGATCGTGAGGCCGTAAAAGAGGAGGTTATAGTTGACCTTGTTG AACATTGTCGATCCAACCAGAAGAAGTTGGTGCAGATGCTCACTACCACCGGGGATGAGGAAGTCCTTGTTCGCGGCCTTGAGTTAAACGACAACCTGCA AATCTTGCTGGCAAAACACGATGCTATAGCTTCAGGTTTGCCCATCCCATCTCCGGTTTCGGATTCAAGTCCTAAGCAAATACAAGGATCTTCTTCAAGC ACCAAACCACCTGAAGTAAAGAACAGTCCTCGTAGCCCCAGCACTGAACCAATCACGACAAGAACTACTCCGTCAACAAGTCATGCGAATGAAGATGATG AAGAAGAAGAGGATGACTTTTCCAAACTAGCTCGCAGGCATACCAAGAGCCATCTTAGTCCAACACAATCCACCAGTGAAACTACCGGAGCCCTTGTACC CGTCGAGACTGGACAAACTTCGCTCGATGCTGCATCTTCATTCTCTGCCACATCAAATGCTCTAGCTATCGTCGATCCAGTTAAGAACACGCAAGAGCAG GATATCATAGACCTTTTAAGTATCACCTTGTCAACCGACTGGACTTCTCCCCAACCCAACCCATCTCATCAAGCTGCATCAACCATGGAACAAAGTGCGC CTCAGATACCCGTTTCCTCTTATCCCGGAAGCCAAGGGCCAGCACCAGCGCCTTTCGATAGCTACGTTGTTCCATGGGCACAGATACAACCTCAACCTCA ATACCATTCGCAACCATTGCAACCTCAGGCACAAGCTCTGCACTATCAGCAACAGCAATTTCGGCCGCAGTTCGAACCGCAATTACAGCCGCAGTTCCAG TCGCAACAACAGTATCAGTATCCTCAACACACGTCAGCGTATCCACCACCACCATGGGCAGTAACTCCAGGTTATGCCAACGGAATTAGCCAAAGTTACT CGCCGGCGAGCAGTACGTTTCCGAGCCCTGCCACGTCATTTCCACATAAAACAGCAGCGGCATCACCCATGCAGCAGAATTATGGGAACTCTTCGAACGG AAGCAACGGAACGGCTATGAATGGTGACCCATTAGTGGGTTTCGGGGCAAGAGCTCCATCTTCGCAACCCACTGCATCGAAACCGTTTGTGCCATCGTAC AGGCTGTTCGAGGACCTGAATGTTCTTGGAAATGCAGAAGGGAAGTTCAAGGTGAATGGCGGTACAGCGCCGAGTATGTCGAGTTCTTCTGGGCAAAGTA TGGTAGGTGGTAGGAAGTGA
AA sequence Show only first row Show all	>Lus10014155 pacid=23152937 polypeptide=Lus10014155 locus=Lus10014155.g ID=Lus10014155.BGIv1.0 annot-version=v1.0 MAMAMASSSSATVAVDKATSDLLITPDWTMNIDICDSINSNHWLAKDVVKAVKKRLQHKNPRVQFLALTLLETMVKNCGDFVHFQIAEKNILGEMVKTVK KKTDVQVRDKVLVLLDSWQEAFGGPGGKYPQYYWSYEELRRSGVPFPPRALNAAPIFTPPLTHSTLRLAEPGYGMPGGSSRRLDETMATEIEGLSLSSLE SMRNVMELLGDMLQAVSPGDREAVKEEVIVDLVEHCRSNQKKLVQMLTTTGDEEVLVRGLELNDNLQILLAKHDAIASGLPIPSPVSDSSPKQIQGSSSS TKPPEVKNSPRSPSTEPITTRTTPSTSHANEDDEEEEDDFSKLARRHTKSHLSPTQSTSETTGALVPVETGQTSLDAASSFSATSNALAIVDPVKNTQEQ DIIDLLSITLSTDWTSPQPNPSHQAASTMEQSAPQIPVSSYPGSQGPAPAPFDSYVVPWAQIQPQPQYHSQPLQPQAQALHYQQQQFRPQFEPQLQPQFQ SQQQYQYPQHTSAYPPPPWAVTPGYANGISQSYSPASSTFPSPATSFPHKTAAASPMQQNYGNSSNGSNGTAMNGDPLVGFGARAPSSQPTASKPFVPSY RLFEDLNVLGNAEGKFKVNGGTAPSMSSSSGQSMVGGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10029341 [exp]	1.0	0.8826
AT1G52320			unknown protein		Lus10035887 [exp]	4.0	0.8566
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	8.5	0.8448
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	13.8	0.8440
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	20.8	0.7970
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	25.1	0.7645
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	26.5	0.8234
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	26.7	0.8480
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	29.1	0.7740
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	30.5	0.8221

Compare expression of checked genes

Lus10014155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.