Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 1291 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 1197 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G08390 61 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 60 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 54 / 5e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 51 / 5e-06 Coatomer, beta' subunit (.1.2) AT2G16780 50 / 6e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G52250 50 / 7e-06 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 50 / 8e-06 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025263 [exp] 1521 / 0 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10009083 [exp] 1515 / 0 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10022752 [exp] 774 / 0 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10033092 [exp] 65 / 3e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10002324 [exp] 62 / 1e-09 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10026094 [exp] 60 / 4e-09 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10041007 [exp] 59 / 1e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 59 / 2e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10027848 [exp] 57 / 6e-08 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 1444 / 0 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G132000 [exp] 1414 / 0 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 63 / 8e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 59 / 1e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 52 / 1e-06 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.001G179200 [exp] 52 / 2e-06 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 52 / 2e-06 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.009G115300 [exp] 51 / 3e-06 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.011G045500 [exp] 51 / 4e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G087200 [exp] 49 / 2e-05 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014156 pacid=23152890 polypeptide=Lus10014156 locus=Lus10014156.g ID=Lus10014156.BGIv1.0 annot-version=v1.0 ATGGCTGCTGAAATTTGTCTTTCTCAGCTTCCATCTTTGGTTGAGGACCCTAATGCAGAGTTCCAGCCGAGCACCTTTTTCACTGAACAGCTAATGGCCT TCGAGGTATGGTTAGATCATGGATCAAAAGAGAAGAAACCACCCGAGCAGTTACCTATTGTTCTTCAGGTTCTACTTAGTCAATGCCATCGGTTTAAAGC TCTTGTTCTTCTTGGAAGATTCCTTGATATGGGCCCCTGGGCAGTTGATCTGGCATTATCGGTGGGAATATTTCCGTATGTGTTGAAGTTGTTGCAAACA ACAACACCAGAGCTAAGGCACATCCTTGTGTTCATATGGACAAAGATTCTTGCTCTTGATAAGTCATGCCAGGTTGATCTTGTCAAAGATGGCGGACAGA CATATTTTATAAGGTTTCTTGACAGCCTGGAAGCATATCCTGAGCAGCGTGCCATGGCTGCCTTTGTTTTGGCAGTCATTGTTGATGGCCATAGACGAGG CCAGGAAGCTTGTATTGAAGCTGGTTTAATTCATGTATGCTTGAAGTATCTTCAAGGTTCAACACCAAATGATGGGCAGTCAGAGCCACTGTTTCTTCAG TGGGTTTCCCTTTGTCTAGGAAAGCTATGGGAGGATTTCAATGAAGCACAAATAATGGGTTTGCAGGCAGATGCTCCTGTGATCTATGCTCCTCTGCTGT CTGAGACCCAACCAGAGGTTCGAGCTTCTGCTGTTTTTGCTTTGGGAACTCTGCTCGACATTGGAGGCGACTCCTCCCAAGATAGTGTGGGAGTAGATGA TCAGTTTGGTGTTGAGAAAGTGAGTGCCGAAAATAGTATTGTTGGAAGCATATTAAGTGCTGTTTCTGATGGAAGCCCACTGGTCAGGGAAGAGGTTGCT GTAGCCTTGGGTCGCTTTGCATTTGGCCACAAGCAACACCTTAAATCCATTGCTGCCTCATATTGGAAGGCCCAGTCCAATTCGGTCTTGAATACCACTC CCTCTTTGGTCCACATAAAAGGGGCAGGAGGTGGATACAATACCAGCACAAACCAGTATATGCCACATGCTAGAATTGTAGCATCCCAAATTGGTCCTCT GACAAGAGTAGGTAGTGATTCTGCATCATTATTGCGAGAGGGAAGAGTGTCCACCAGTAGTCCACTTGCTGGTACAGGAATTATGCATGGGTCACCGCTA TCTGATGATTCCTCTCTACATTCTGATTCCGGCATTAATGATGTCACAAGTAATGGGGCTGTACATCAATCGGGGCCAAAACCTCTTGATTCTGCTGTAT ATTCGCAATGTGTACTGGCGATGTTAACCTTGGCAAGGGATCCTTTACCCCGAATAGCAAGTCTCGGGCGCAGGGTACTCTCAATTATTGGCATTGAGCA AGTTGTAGCAAAACCTGGGAATTATACAGGGGGCACTGGCCATCCTGTTGAATCTACAACTTCATCTCCAGCTCCAATCTTTGGCGGGCTGGCTCGATCA TCCTCGTGGCTTGACATGAATGCAGGTCATCTACCGTTGACCTTCAGAACTCCACCTGTCAGCCCTCCCAGAAATAGTTACTTGCGCAGAGTTTGTTCTT TGGATTTGGGACCTCACTTGATGAATTCCCCTTCTGGATTGGCTGCTCCACTTGCAGATTCAAGTGGAGCTTCTGGTTTCTCAGAACAGAGTCTTCTCCC TCAATCAACAATCTACAACTGGAGTGCTGGTCATTTTTCCAAGTCGCTTCTTACTGCCACTGATGATACTGAAGAGATAGTGATCAGACGAGAAGAGAGG GAGAAGTTTGCTTTGGAACACATCGCAAAATGCCAGCACACTTCTGTTGGCAAGCTTAACAATCAAATTGCTGGATGGGATACAAAGTTTGAAGGTGGCA CGAGAGCGACTCTGCTGCATCCTTTTTCTCCTATAGTAGTTGCTGCAGATAATAATGAACGAATCAGGGTGTGGAACTATGAAGAAGCTACGCTTCTCAA CGGGTTTAATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTGTGCCTTGTGAATGAGCTTGATGACAGCTTGCTTCTTGTTGCTTCCTGCGATGGT AATGTTCGGATTTGGAAAGATTACTGTGTAAAAGGGAAGCAAAAAATTGTTACTGCATTCTCTTCTATCCAAGGCCATAAACCGGCTGCACGTAGTTTGA ATGCTGTTGTTGATTGGCAGCAACAGTCTGGCCATCTGTATGCTTCCGGTGAGGAATCCACTGTAATGCTTTGGGATTTGGAGAAAGAACAGCTTGTCAA TTCCATTCCAACATCATCGGATTGTAGAGTTTCATCACTGTCTGCTTCTCAAGTTCATCGAGGTCAGTTTGCAGCGGGCTTTGTGGATGGTTCAGTAAGA TTATATGATGTTAGGACACCTGAAACGCCTGTCTGTACGATGCGACCACACACCCAAAAGGTCGAACGAGTTATGGGTATTGGGTTTCAACCAGGACTCG ATCCAGGAAAGATTGTGAGTGCATCTCAGGCCGGTGATATTCAATTCTTGGACGTCAGAAATCAAAGAGATGCCTACCTAACAATCAACGCCCACAGAGG CTCACTGGCTGCATTATCTGTTCATAGGCACGCTCCGATCATCGCCAGTGGCTCAGCAAAACAGATCATCAAAGTATTCAGTCTCGAGGGTGCACTTATT GGGACCATCCGGTATTACTCTACCTTCATGGCCCAGAAGATTGGTCCTGTGGGTTGCCTCGATTTCCATCCTTACCAACCTCTGCTTGCATCTGGTGCCG CTGATGCTTACGTATCTATCTGGGCCGATGATAACACCCGAACAAGGTGA
AA sequence Show only first row Show all	>Lus10014156 pacid=23152890 polypeptide=Lus10014156 locus=Lus10014156.g ID=Lus10014156.BGIv1.0 annot-version=v1.0 MAAEICLSQLPSLVEDPNAEFQPSTFFTEQLMAFEVWLDHGSKEKKPPEQLPIVLQVLLSQCHRFKALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT TTPELRHILVFIWTKILALDKSCQVDLVKDGGQTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKYLQGSTPNDGQSEPLFLQ WVSLCLGKLWEDFNEAQIMGLQADAPVIYAPLLSETQPEVRASAVFALGTLLDIGGDSSQDSVGVDDQFGVEKVSAENSIVGSILSAVSDGSPLVREEVA VALGRFAFGHKQHLKSIAASYWKAQSNSVLNTTPSLVHIKGAGGGYNTSTNQYMPHARIVASQIGPLTRVGSDSASLLREGRVSTSSPLAGTGIMHGSPL SDDSSLHSDSGINDVTSNGAVHQSGPKPLDSAVYSQCVLAMLTLARDPLPRIASLGRRVLSIIGIEQVVAKPGNYTGGTGHPVESTTSSPAPIFGGLARS SSWLDMNAGHLPLTFRTPPVSPPRNSYLRRVCSLDLGPHLMNSPSGLAAPLADSSGASGFSEQSLLPQSTIYNWSAGHFSKSLLTATDDTEEIVIRREER EKFALEHIAKCQHTSVGKLNNQIAGWDTKFEGGTRATLLHPFSPIVVAADNNERIRVWNYEEATLLNGFNNHDFPDKGISKLCLVNELDDSLLLVASCDG NVRIWKDYCVKGKQKIVTAFSSIQGHKPAARSLNAVVDWQQQSGHLYASGEESTVMLWDLEKEQLVNSIPTSSDCRVSSLSASQVHRGQFAAGFVDGSVR LYDVRTPETPVCTMRPHTQKVERVMGIGFQPGLDPGKIVSASQAGDIQFLDVRNQRDAYLTINAHRGSLAALSVHRHAPIIASGSAKQIIKVFSLEGALI GTIRYYSTFMAQKIGPVGCLDFHPYQPLLASGAADAYVSIWADDNTRTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	0	1
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	5.3	0.8900
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	6.6	0.8672
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	7.9	0.8728
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	10.0	0.8852
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	10.2	0.8516
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	13.4	0.8645
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	15.6	0.8375
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	20.8	0.8581
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	21.4	0.8484
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	22.1	0.7812

Compare expression of checked genes

Lus10014156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.