Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 159 / 3e-45 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 138 / 7e-38 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022752 [exp] 189 / 3e-57 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10025263 [exp] 184 / 9e-54 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10009083 [exp] 142 / 4e-39 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 177 / 1e-51 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G132000 [exp] 163 / 1e-46 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014157 pacid=23152886 polypeptide=Lus10014157 locus=Lus10014157.g ID=Lus10014157.BGIv1.0 annot-version=v1.0 ATGGCAATGGACGATTTAACGGCGACTCGATTCACGCAGTCTTCCACTTCGGCGGTGGTCTCCGATCACTATGACGATGATGGCGGCGTCGAGGATTCAA GAAGGGACTCCGAGGCGGACGCTAGTACAAGCTACGGAAATGCAGCTACTAGCATGGCGTATTTGCCTCAGACTATAGTGTTGTGCGAGCATCGGCACGA GGCGCTTGAGGTTTCTGTGCCTATAGGTCCTTCTGACAGTGGGGTTGTGTCTAAATGGCGTCCCAAGGATCGAAGCTATACGCAGTACATACCGCTGCCT ATCAGTGATCTTGATTCCTGGTTGAAAACACCTTCTATCTATGTCTTCGACTGTTCTGCTGCTGGGATGATTGTGAATGCCTTTGTTGAGCTTCACGACT TGAATAGTTCTGCATCTTCTGCGTCCACGAGAGACTGCATTTTGCTTGCAGCTTGTGAAGCACATGAAACACTGCCTCAAAGTCCCGAATTTCCGGCTGA TGTGTTTACTGCTTGCTTAACTACTCCCATCAAAATGGCATTGAGATGGTGA
AA sequence Show only first row Show all	>Lus10014157 pacid=23152886 polypeptide=Lus10014157 locus=Lus10014157.g ID=Lus10014157.BGIv1.0 annot-version=v1.0 MAMDDLTATRFTQSSTSAVVSDHYDDDGGVEDSRRDSEADASTSYGNAATSMAYLPQTIVLCEHRHEALEVSVPIGPSDSGVVSKWRPKDRSYTQYIPLP ISDLDSWLKTPSIYVFDCSAAGMIVNAFVELHDLNSSASSASTRDCILLAACEAHETLPQSPEFPADVFTACLTTPIKMALRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	2.4	0.9729
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	3.2	0.9708
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	3.5	0.9609
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10029218 [exp]	4.0	0.9680
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	5.7	0.9538
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	7.0	0.9602
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	7.7	0.9704
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	11.4	0.9642
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	11.6	0.9573
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	12.0	0.9589

Compare expression of checked genes

Lus10014157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.